| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3264 |
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| Symbol | |
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| ID | 4605511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3872282 |
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| End bp | 3874201 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639782680 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_929136 |
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| Protein GI | 119776396 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00516695 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.802494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGT TTCGACAGCT GTATTCGCTA TTGTTTGGTC TGTTTTTATT GGTAATCACC
GCCTTGGCTT ATGTGCAATT CACAGAAACC AAGAGCTTTT TAACCAAACA GATGGAGTCA
GACCTCAATA ACGTCAGCAA TTCGCTGGGT TTGTTGCTGG TCCCGGCCTT GGAAACCGGC
GATATCGCCA CCGCCGAGAC ACTCATTAAT GTCATCTTCG AAGGTGGTTA CTACCAGCAG
GTAAAGCTGA CCTGGTTAGT GGATGGTAAA CAACAGGAAT GGAACAACAG CCTGGAAATC
CAGGGCGTTC CCCAGTGGTT CATTAACCTC GGTATTTTCG GCACCATCAA AAGGGAAAGC
ACCATCACCT CGGGTTGGCT GCAGTTGGCA CAACTGGAAG TGACTGCTCA CCCCGGTTTT
GGTTACCACG AACTGTGGCG CATTCTCACC AACACCATCA TCGTCTTCTC TATCCTGTTT
TTGGTCGCCA TATTCCTCGC TCGCTTTGGC CTCAGCTGGA TCTTAAAGCC GCTGCATATA
GTCTCTGAGC ACGCCAAAAG CATTGCCAAT CGCCAATTCG GTCCAGAGCT TGCCATTCCC
AAGACCAGTG AGTTAAAGGA AGTGGTGATT GCGTTTAACA GCATGTCTTC CCAGCTCAAA
CAAATCTTCA GCTCACTGGA TGAAGAAGTA ACCGCCCTGC GCAAAAAGAA TCTGGTGGAT
CAGGTGTCTG GTTTGCCCAA CCGCCAGTAT CTGGTGGGGC GAATTAACAG CTGGCTCTCT
GAGCCCGGCA GTGGTGCACT CTTTATGGCT AAGTTTGACT GGCTTGAAGA GGTACACGCC
AAATACGGTT ATCAAGTCCG CGACGAAACC ATCAAGCTCC TGTCAGAAAA ACTGCAATCC
CAACTGGAAG AAATTGCGCC GGGCGTGGTT GCCAGAATTG CCGCGTTTGA GTTTGCATTC
CTGGTATTTG ATGTGGATAA AGAACTCATC AGTAAGTACC TGCAAACCCT GATACGCACA
GTCAATCAGG AAATCTCAAA AGCTGGCGGC AAGCCCAACG AGCATTTCGC CATAGGTATT
GCTGAACGCA TTGGCTCTAT GACTGTGTCT GACATACTGG CGCAATCGGA TAATGCGCTG
CAAACAGCCA TCAAGAGTGG CAAGGTGTAT CACTGGTTTG AATCCAGTGA AGAGCAGATG
TTTACCCGAG AGCAATGGCG TGAAAAGCTT TCCAGCGCCA TCAACGCCAA ACTGTTTCAG
TTCCGTTGGC AGCCAATTCA GCTCACCGAC GGCGCAGGCC TGTTGCAGCA TGAGCTTTAC
TGCCAATTGG AAATTGGCGA TAAGCTGGCC CATGCCGGAC AATTTATGCC CTATGTAGAA
CTGCTTTCAC TGGGCGCCTT GCTGGATAAG TGTTTGATCC AGAAAGTGCA CGATATACAT
CTGCTGGAGC GGAATTTTGA ACCTGTAGCC ATTAACCTGA CCCATCAGAG CTTAACCGAC
ACTGATTTCC ATCAATGGCT GCAGCAGTTC CTGCGCTCAA CCCCATTGGC AGACCGTCTG
TGCTTCGATA TACCTGAATC CGGGGTCTAC AGTAATCCCG AAGCCTGCGA GGCTCTGTGC
GCCATCATCA GGGACAATGG CGCCAAGTTT GGTATTGATC ACTTTGGTCG TCAATTTGGT
TCAATGTCTT ATCTGCAAAC TCTGAGACCC AGCTATGTGA AACTGGATCA ATCCTTTGCC
TACTATGACG AGAACCAGCA CAACGCCGAA CTGTGCCGTG CCTTGGTCAA CGTAGCCCGT
GGCTTGGAAA TTCAGGTTAT TGTCACAGGT ATTCAGGAAA AGCCTCAACT GGATCGCTTT
ATTCCGCTGA AGACAACAGC ATACCAGGGC TTTATTGCTC CACCAGTGAA TGTAAGCTGA
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| Protein sequence | MTLFRQLYSL LFGLFLLVIT ALAYVQFTET KSFLTKQMES DLNNVSNSLG LLLVPALETG
DIATAETLIN VIFEGGYYQQ VKLTWLVDGK QQEWNNSLEI QGVPQWFINL GIFGTIKRES
TITSGWLQLA QLEVTAHPGF GYHELWRILT NTIIVFSILF LVAIFLARFG LSWILKPLHI
VSEHAKSIAN RQFGPELAIP KTSELKEVVI AFNSMSSQLK QIFSSLDEEV TALRKKNLVD
QVSGLPNRQY LVGRINSWLS EPGSGALFMA KFDWLEEVHA KYGYQVRDET IKLLSEKLQS
QLEEIAPGVV ARIAAFEFAF LVFDVDKELI SKYLQTLIRT VNQEISKAGG KPNEHFAIGI
AERIGSMTVS DILAQSDNAL QTAIKSGKVY HWFESSEEQM FTREQWREKL SSAINAKLFQ
FRWQPIQLTD GAGLLQHELY CQLEIGDKLA HAGQFMPYVE LLSLGALLDK CLIQKVHDIH
LLERNFEPVA INLTHQSLTD TDFHQWLQQF LRSTPLADRL CFDIPESGVY SNPEACEALC
AIIRDNGAKF GIDHFGRQFG SMSYLQTLRP SYVKLDQSFA YYDENQHNAE LCRALVNVAR
GLEIQVIVTG IQEKPQLDRF IPLKTTAYQG FIAPPVNVS
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