| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3261 |
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| Symbol | |
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| ID | 4605508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3869538 |
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| End bp | 3870947 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782677 |
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| Product | type I secretion outer membrane protein, TolC |
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| Protein accession | YP_929133 |
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| Protein GI | 119776393 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.537181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA AACGCTTGCA ACAGTTGCGC TTGGGCGTAC TGGCTGCAGC CATAGGCGGC
ATCATGATGC CTATGGCTGC AAGTGCCATG ACGCTTGAAC AGGCCGTCGC CCACACGCTG
GACAGCAACC CTGACCTGCG TGCTGCTTTC AACCGCTTTA AAGCGCGTGA AGAGCAGGTA
AGTCAGGCGA TTTCCGGCTA TATGCCTACG GTAGATATCA CCGGTGGCTG GGGCTGGGAA
CAAACGGACA GTCCAGCAAC ACGTCGTCGT TTCGGCCGTG AAGATGGTGA CTTTGAACTC
AAGCGCGGTG AAGCCGGTAT CAGCATCCGT CAGATGCTGT TCGATGGTTT TTATACGGCC
AGCGAAGTAG ATCGCCTGAG CTTTGAAGCC AGTGCAGATC AGTGGGCCTT GTTCGCCGCT
GCTGAGGATA TGGCGCTGGA TGTGGCGAAA GTGTACGTCA ATTACATCCG TGCCGAGCAG
GTGATGACGC TGGCGGAGAA AAACCTGGCG ACTCACAAAG AAATCTATGA CCAAATCAAG
CAGCGTACTG ATTCTGGTCT GGGTTCTATT GCTGACTTGT CTCAAATTAC CGGTCGTTTG
GCCCGCGCCA ACGCCAACGT GATTTCAGCG CGTAATAATT TCTTCGATGC CAAGGCGCAG
TTCGCCCGCG TGGTAGATAA AGCACCCGAC GACATGATTG TACCTGTACC GGATGCCGAT
ATGCTGCCAA CTGACTTGTC CACCAGTGTA TCTTTGGCGC AGGAGAACCA TCCGGTGCTC
AAGTCGGCCG CTGCCGACAT CAACGCAGCC GAGAACGAGC GCTCATCGGC GCAATCGAGC
TACTATCCAC GCGTTACGCT TGAGCTCGAC GGGAACTGGA ACAACAACCT TGATGGCGAA
GATGGTATCG CAGGCACTGG CGCCTTCCGT ACCGATGTTG GTGGTTATAA CAACGACCTG
GTTGCCATGG TGCGTGTACG TTACAACCTG TTCGCCGGCG GTAAAGATCT CGCCCGTGAA
AAAGAAGCTG CCTACAAAAT CGGTGAGGCC AAAGAAATTC GCCAACGCGC TTACCGCGAA
GTCGTTGAAG GCGTCAACCT GGCATGGAAT GCCTATGAAA TGCTGACACC ACAAAAAGAC
TACATCCGTG AACATGTGAA AGCGGCGAAG GACACACAAG TGGCTTACAC CCAACAGTTC
AATCTGGGTC AGCGCACCTT ACTCGACTTG CTGGATACCG AAAACGAACT CTTTGAAGCC
CGTAAAGACT ATCTGCAGGC TGAGTTCGAT GAGATTGTCG CCAAGTATCG GGTACTGAAT
GCCACCGGTC GCCTGTTGGA TTCACTGAAG GTAACCAGAC CCACGGTATG GCAGGGAGAG
CGTGAATATG AAGGGGGAGT AAAACCATGA
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| Protein sequence | MNKKRLQQLR LGVLAAAIGG IMMPMAASAM TLEQAVAHTL DSNPDLRAAF NRFKAREEQV
SQAISGYMPT VDITGGWGWE QTDSPATRRR FGREDGDFEL KRGEAGISIR QMLFDGFYTA
SEVDRLSFEA SADQWALFAA AEDMALDVAK VYVNYIRAEQ VMTLAEKNLA THKEIYDQIK
QRTDSGLGSI ADLSQITGRL ARANANVISA RNNFFDAKAQ FARVVDKAPD DMIVPVPDAD
MLPTDLSTSV SLAQENHPVL KSAAADINAA ENERSSAQSS YYPRVTLELD GNWNNNLDGE
DGIAGTGAFR TDVGGYNNDL VAMVRVRYNL FAGGKDLARE KEAAYKIGEA KEIRQRAYRE
VVEGVNLAWN AYEMLTPQKD YIREHVKAAK DTQVAYTQQF NLGQRTLLDL LDTENELFEA
RKDYLQAEFD EIVAKYRVLN ATGRLLDSLK VTRPTVWQGE REYEGGVKP
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