Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3260 |
Symbol | |
ID | 4605507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3868126 |
End bp | 3869508 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639782676 |
Product | HlyD family secretion protein |
Protein accession | YP_929132 |
Protein GI | 119776392 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.500771 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAAAG CACTGACAGC AAGGGATCTT GAGATGGTCG ATGACGTATA TGGCGCCATG ATGACCGATG CACCTACCAG CCACAGACTC ACTATCTGGG CACTCACATC GTTGATATTT GCCTTCCTTA TCTGGGCGTA TTTTGCTGAG CTGGATCAGG TTACCGTGGG TACAGGCAAG GTTATCCCCT CGTCGCAAAT TCAGGTTATT CAAAGTCTGG ACGGCGGTGT ACTGCAAGAA CTGTTCGTGC GCGAAGGCAA TATAGTCGCC AAGGGAGAAC CTTTGGCACG TATTGATGAC ACCCGCTTCC GCTCAGACTT TGCCCAACAG GAAGAAGAGG TGTTCAGCTT ACAGGCAAAT GTGATCCGTA TGCGGACTGA GCTGAACAGT ATTACTGTGT CAGATATGGC ATCAGACTGG CGAGAGCAGG TTCGAATCGT CAAACAGGAA CTGATATTCC CCGACGCTCT TAGCGCACAA AAAGCTGAAT TGGTCGCGCG TCAACAAGCC GAGTATAACG GTCGACTCGA CAATCTGGAA AACCAACTGG AGATTCTGGC CAGGCAAATT CAGCAGCGTC AGCAAGAAAA TGAAGAGCTG ACTACCAAGA TAGCGACCAT GACCACCAGT TTTCAGCTCA TCAGCCGAGA ACTGGAACTT ACCCGTCCCC TGGCGCAAAA AGGCATTGTG CCTGAGGTTG AATTACTGAA GCTTGAACGC ACCGTGAACG AACTCCAGGG TGAGCTCAAA GCCATGCGTC AGCTCAGACC TAAAATTAAA GCCACGCTGG ATGAAGCCAT ATTAAAACGC CGTGAAGCCG TGTTTGTATT CGCCGCTGAT ACCCGTGCCC AGCTAAACGA CATGCAAACC CGTTTGTCGC GTATGAGTGA GGCGCAGGTA GGGGCACAGG ATAAGGTGAG TAAAGCCGTC ATTACTTCCC CCGTGAATGG CACAGTGAAA ACCGTCCACA TCAACACACT CGGCGGCGTG GTGCAGCCCG GGGTAGATAT TATGGAAATT GTGCCATCGG AAGACCAACT GCTTATCGAG GCCAAGATCA CCCCCAAAGA CATTGCGTTT TTACATGTTG GCTTGCCTGC CGTAGTTAAG GTAACGGCCT ATGATTTTAC CCGCTACGGC GGGTTACAAG GCACTGTTGA GCACATCAGT GCCGATACCA CCCAGGACGA AGAAGGTAAC AGCTTTTATC TGATACGCGT CAGGACCGCA GAGTCCAGCT TGGTTAAAGA CGATGGCACG GAGATGCCAA TTATCCCCGG GATGCTGACC TCTGTGGATG TCATCACCGG ACAAAGATCT ATTCTTGAAT ACATACTTAA TCCAATTCTA AGAGCCAAAG ACACCGCACT TAGGGAACGA TGA
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Protein sequence | MSKALTARDL EMVDDVYGAM MTDAPTSHRL TIWALTSLIF AFLIWAYFAE LDQVTVGTGK VIPSSQIQVI QSLDGGVLQE LFVREGNIVA KGEPLARIDD TRFRSDFAQQ EEEVFSLQAN VIRMRTELNS ITVSDMASDW REQVRIVKQE LIFPDALSAQ KAELVARQQA EYNGRLDNLE NQLEILARQI QQRQQENEEL TTKIATMTTS FQLISRELEL TRPLAQKGIV PEVELLKLER TVNELQGELK AMRQLRPKIK ATLDEAILKR REAVFVFAAD TRAQLNDMQT RLSRMSEAQV GAQDKVSKAV ITSPVNGTVK TVHINTLGGV VQPGVDIMEI VPSEDQLLIE AKITPKDIAF LHVGLPAVVK VTAYDFTRYG GLQGTVEHIS ADTTQDEEGN SFYLIRVRTA ESSLVKDDGT EMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALRER
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