Gene Sama_3210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3210 
Symbol 
ID4605457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3799098 
End bp3800972 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content55% 
IMG OID639782626 
ProductGGDEF domain-containing protein 
Protein accessionYP_929082 
Protein GI119776342 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAGAC TCCTGCTGCT GTTACTCGCA CTGGGATATA GTCTGCTGGC GCAGGCCGGC 
GCCCCTGCTT TGGTATACAC GCAAGAGTCG GGGGATGTGA TAGAACTGAC CCCCTGGGTA
AGCGCGTTTC AGGCCAGCGA ACTTATTGAT TACCGAGAAC TTCCACCCCA GAATGACCCA
CGCTGGCAAC AACTTCCCAA GCAGGGCACC CATGGCATGG GGGCGCAGAA TCGCTGGCTC
AGGATAGATA TTGATGTCAG AACCCATCCG GGCAGCCGGG TGCTCAGTAT CAATAACCCC
CTGCTGGATA ACTTGCGACT CTATCATCTG GTCAATGGCA ACCTGATGAC TGAACACCAT
TTTGGTGACA GCTTGCCATT TGATGAACGC CTGCTCCTGA GTACTCAGTT CCTTTACCCG
TTGCAGCTGC GGCCATGGGA GCATCACACC CTGCTGCTCC GGGTCGATAC CGAAGGTAGC
AGCCATGTGC CCTTGACTCT GATGACGCCC GGTCATCTGA GCCAGATGCT CGAAAGCCGT
AATCTGGTTC AGGGTTTCCA GCTTGGCATC CTCGCAGCCA TCGGTCTGTT CAGTTTATTC
GTGGCACTGG CCTCAGGCTC CTTCAGCTAC AGCTATTACG CCGCTTATGT GTTGTCCATG
ACACTCTTGG TTGCCTCCTT GCAAGGGGTG GCATTCCGCT ACCTTTGGCC ACAATTACCA
GCCATGCAAG CCTGGGTTAT CCCGTTCCTG CTACCGCTGG TCATGTGTTT TGCGCTCATG
TTTGCCGAAA AGGTATTGCA ACTTAAATAC CTGAATATTC GTATGCTGCG CATTTGTCGC
TTCAGCGCCA CCTTCAGTCT GTTTCTGGCA CTGCTGTCCC CCTTTATCAG CTACAGCCTG
GCGATGTATT GCGACCTGGT CGCCCTGCTG GGTATTGCCG TGGTACTGCT CGCCTTCGCT
CTGGTGCAGG CCCTGCGGGG ACAAAAACTC GCCCGCCTTT ACTTCGTCGG TTGGATAGTC
TTTCTGGCTA GCGTTATTGT CACCAGCCTG ATTTACCTCG GTGCCATCCA AACCACCATG
GAACCCCTCA GCCCGGCCAT GGCGGGGGTC ACCTTTGAAA TTGTGTTCAT GTCGCTGGTA
CTGGCCATTC GTTACAGTGA CGAGCGCAAA GCCAAACAGC GCATACAGCA GGAAGCCCTT
GAGCAGGCCA AGCGTATCCG TGAAGCCCGA GAGGAAGCCC TCAAGGTCGA GGCCGAATCC
AACGAGCGCC TGGAAGAGAT GGTGCAGGAA CGCACCCTTG AGCTGGAAAT TGTCCTGCGT
GAGCTTAATG AGGTGAACCA AAAACTCACC GAACAAACCA CCATCGACAG CCTCACCGGC
GTGAAAAACC GGGCTGCATT CAATAAGCGC TTGCAGGCCG AAGGACGCAT AAGCCGACGT
CAGCAAACCC CCATGGCTCT GCTGATGCTG GACATAGATC ATTTCAAGAA TATCAACGAC
AAATATGGCC ACCTCGCCGG CGACTACACC CTGAAAGCCA TCGCCGATAC GCTGAGTGCA
CAACTCAGGC GCCCAACGGA TCTCGTGTCA CGTTTTGGGG GCGAGGAGTT TGCTATCATA
CTGCCATCCA CCGATGCTGA AGGAGCCGTC GCCGTCGCCG AACATATCCG CGAAGCGGTA
GAAGAGCTCA CCATCAAGTG GGAGCAATTT ATGATCCCGC TGACCGTGAG CATTGGTGTC
AGCAGCAATA TTATTGAGAG TGACGAGCAT CCGCTGCAGC TGCTTGAGCA GGCGGACAAG
GCGCTCTATC AGGCCAAACA CGACGGCCGT AACAGGGTGG GCCTTTTTCA GGACATACCC
GTTCCCCATC CATAG
 
Protein sequence
MGRLLLLLLA LGYSLLAQAG APALVYTQES GDVIELTPWV SAFQASELID YRELPPQNDP 
RWQQLPKQGT HGMGAQNRWL RIDIDVRTHP GSRVLSINNP LLDNLRLYHL VNGNLMTEHH
FGDSLPFDER LLLSTQFLYP LQLRPWEHHT LLLRVDTEGS SHVPLTLMTP GHLSQMLESR
NLVQGFQLGI LAAIGLFSLF VALASGSFSY SYYAAYVLSM TLLVASLQGV AFRYLWPQLP
AMQAWVIPFL LPLVMCFALM FAEKVLQLKY LNIRMLRICR FSATFSLFLA LLSPFISYSL
AMYCDLVALL GIAVVLLAFA LVQALRGQKL ARLYFVGWIV FLASVIVTSL IYLGAIQTTM
EPLSPAMAGV TFEIVFMSLV LAIRYSDERK AKQRIQQEAL EQAKRIREAR EEALKVEAES
NERLEEMVQE RTLELEIVLR ELNEVNQKLT EQTTIDSLTG VKNRAAFNKR LQAEGRISRR
QQTPMALLML DIDHFKNIND KYGHLAGDYT LKAIADTLSA QLRRPTDLVS RFGGEEFAII
LPSTDAEGAV AVAEHIREAV EELTIKWEQF MIPLTVSIGV SSNIIESDEH PLQLLEQADK
ALYQAKHDGR NRVGLFQDIP VPHP