Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3200 |
Symbol | |
ID | 4605447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3791276 |
End bp | 3791761 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639782616 |
Product | ribonuclease activity regulator protein RraA |
Protein accession | YP_929072 |
Protein GI | 119776332 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0684] Demethylmenaquinone methyltransferase |
TIGRFAM ID | [TIGR01935] RraA famliy [TIGR02998] regulator of ribonuclease activity A |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATACA ACACCTCAGA ATTATGTGAC ATGTTTCTGG ACGTCGTGGA TGTGGTAGAG CCCATGTTCA GTAATTACGG TGGTGTTAGC TCATTCGGTG GCGCCATCAG CACAGTCAAG TGTTTCGAAG ACAATGGGCT AATTGCCGAT GTGCTGGCCG AAGACGGTGA AGGACGAGTC TTACTGGTCG ATGGCGGGGG CTCACTGCGC CGTGCCCTGA TTGATGCCGC AGTGGCAGAA ATCGGTGTCA ACAATGGCTG GGAAGGCATT ATCGTCTATG GCAGCGTGCG CGATGTGGAT GCCCTGGAAG AGCTGGATAT AGGAATTCAG GCGCTGGCAT CCATTCCTGT GGGAGCCGAC AACAATGGTA TTGGCGAACT CGATGTGCCA TGCAATTTCG GCGGCGTCTC CTTCCTGCCC GGCGACCATA TTTATGCCGA CAGCACGGGC ATTATTCTCT CTCCGGAGCC GCTGGATATA GAGTAA
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Protein sequence | MEYNTSELCD MFLDVVDVVE PMFSNYGGVS SFGGAISTVK CFEDNGLIAD VLAEDGEGRV LLVDGGGSLR RALIDAAVAE IGVNNGWEGI IVYGSVRDVD ALEELDIGIQ ALASIPVGAD NNGIGELDVP CNFGGVSFLP GDHIYADSTG IILSPEPLDI E
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