Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3188 |
Symbol | |
ID | 4605435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3780262 |
End bp | 3783462 |
Gene Length | 3201 bp |
Protein Length | 1066 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639782604 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_929060 |
Protein GI | 119776320 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACAGA AACTCATAGA GCAGGCGGTG CGAAGCCGCC TGATAGTGCT GATTTTTCTT ATCGGGGCCA TGGCGGCTGC CGCCGTGATG TTGCCGAAGT TGAATCTGGA TGCCTTTCCC GATGTGACCA ACGTGCAGGT GCAGGTGAAT ACCGCCGCCG AGGGCCTTGC CGCCGAAGAG GTGGAGAAGC TCATCAGCTA CCCGGTGGAG TCGGCCATGT ATGCGCTGCC TTCTGTGACC GAAGTACGCT CTTTGTCGCG CACCGGGCTT TCCATTGTGA CCGTGGTGTT TGAAGAAGGC ACCGACATCT ACTTCGCCCG TCAGCAGGTG TTTGAGCAGT TGCAGGCGGC CAGAGAGGCT ATCCCGGATG GAGTGGGTGT GCCGGAAATC GGCCCCAACA CCTCTGGCCT CGGGCAGGTG TACCAGTACA TTCTGCGGGC AGCGCCCGAG TCTGGCATAG CGCCTGACGA GCTTCGCAGC CTCAACGACT ATCTGGTGAA GCTCATCATG ATGCCGGTGG GCGGCGTGAC CGATGTGCTC TCGTTCGGTG GTGAGGTGCG TCAGTATCAG GTGCAGGTCG ACCCGGCCAA GCTGCTCTCT TATGGCCTCA AACTGGACGA TGTGACCAGG GCGCTGGAGG GCAATAACCG CAACGCCGGT GGCTGGTTTA TGGCCAAGGG CCAGGAGCAA CTGGTGGTGC GTGGTTATGG CCTCTTGCCT GCCGGTGAAG CGGGGCTCGA TGCCATTGCG CAAATTCCGC TGACCGAATG GCAAGGCACG CCGGTGCGGA TTATGGATGT GGCTCAGGTT GCCTTTGGCA GTGAAATCCG CGTTGGTGCC GTGACCATGA CCCGCCGTGA TGAAGCCGGT AGTCCGCAGG TGCTGGGTGA AGTGGTGGCT GGGGTGATTT TGAAGCGCAT GGGCGCCAAC ACCAAGGCGA CCATCGATGA CATCAACAGC CGCACCGCCC TTATTCAGCA GGCATTGCCG GATGGGGTGA CCTTCGAGGT GTTCTACGAC CAGTCGGATT TGGTCACCAA GGCGGTGACT ACGGTGCGCG ACGCCCTGTT GCTGGCCTTC ATGTTTATTG TGGCTGTGCT GGCGCTGTTT TTGGTGAATG TGCGTGCCAC CGCGCTGGTG CTCCTGTCGA TTCCGGTTTC CATCGCGCTG GCGCTGATGG TGATGTCTTA CTTTGGCATG TCGGCCAACC TCATGTCCCT CGGCGGCCTT GCCGTGGCCA TTGGTATGCT GGTGGATGGC TCTGTGGTGA TGGTGGAGAA CATCTTCCGC CACCTCACCC AGCCTGAAGG CCGGGTTGAT AACGGCTTGC CGACCGACCC TGGCCTCAGC GAAGAAGATG CCCACCGCGA AGGCGGCTAT GGCGGTATTG CCATGCGGAT TTTGCAGGCG GCACGGGAAG TATGCAGCCC GATCTTCTTT GCAACCCTCA TTATTATCGT GGTGTTTGCG CCGCTGTTTG CCCTCGAAGG GGTGGAAGGC AAGCTGTTCC AGCCGATGGC GGTCAGCATC ATTCTGGCCA TGCTGTCGGC ATTGATGGTG GCGTTGGTGG TGGTGCCTGC GCTGGCGGTG TACCTGTTTC GCCGCGGCGT GCATCTGCGC CAAAGCCCGC TGCTTACCCC CATCGATAAA GGCTATCGCC GTGTGCTGGG CGCCGTTATG GCGCGCCCCA AAACCGTGGG GATTACGGCA CTGGTGCTGT TTGGTCTCAG CATGGCGCTG CTGCCACGGC TTGGCACCGA GTTTGTGCCC GAGCTTGAAG AAGGCACCAT CAACCTGCGG GTCACCCTGG CGCCCACCGC GAGCCTGGAT ACCTCGCTGA TGGTGGCGCC CAAGCTTGAA GCCATGCTGA TGGAATTTCC CGAGGTGGAT TATGCGCTGT CGCGTATCGG TGCCCCTGAG CTTGGCGGCG ACCCTGAGCC TGTGAGCAAC ATCGAAATCT ATATCGGCCT TAAGCCCATC GATGAGTGGC AGTCAGCCGC CAGTCGCGCC GAGTTGCAGC GACTGATGGA AGAAAAGCTG TCGGTGTTCC CGGGTCTGCT GTTTACCTTC TCTCAGCCGA TTGCCACCCG GGTGGATGAG CTCTTATCCG GCGTAAAGGC CCAGCTTGCC ATTAAGCTGT TTGGCCCGGA TCTGGATGTG CTGGCCGAAA AGGGTCAGCA GCTGTCGGAA CTGGTATCAA AGGTGCCCGG CGCCGTGGAT GTGTCACTTG AGCAGGTGAG CGGCGAAGCG CAGCTGGTGG TGCGTCCTGA CCGTGCCCGT CTGGCGCGCT ACGGCATCAG CGTCGATGAG GTGATGAACC TCGTCAGCAC CGGCATAGGT GGCAGCGACG CCGGGCAGGT GATTGACGGC AACGCCCGCT ACGACATCAA TGTGCGCCTC AAGGCCGACA CCCGCGCCAG TGCAGATGCC ATAGCGGATC TCTTGCTGGT TGGCGCCAAC GGCGCCCGGG TACGTCTGGG TGAGGTAGCC GATGTAGTGG TGGAAATGGC GCCGCCGAAT ATTCGCCGCG ACGATGTGCA GCGGCGGGTG GTGGTGCAGG CCAACGTTTC CGGCCGCGAT ATGGGCTCGG TGGTGAAAGA CATCTACGCC CTGGTGCCTG AGGCCGATTT GCCGCCGGGT TATACCGTCA GCGTGGGTGG TCAGTACGAA AACCAGCAAC GGGCCCAGGC CAGGCTGATG CTGGTGGTGC CTGTGTCCAT CGGTCTTATT GCGCTCTTGC TGTACTTCTC CTTCGGCGCG CTCAAGCAAG TTGGGCTCAT CATGGCCAAC GTGCCGCTGG CGCTGATTGG CGGCGTGGTG GCGCTCTATG TCAGCGGCAC GTATCTGTCG GTGCCCAGCT CCATCGGTTT TATCACCCTG TTTGGCGTGG CCGTGCTCAA TGGCGTGGTG CTGGTGGACT CCATTAACCA GCGCCGCGCA GGTGGTGAAG GCCTGTATCA GGCGGTGTAC GAAGGCACGG CGGCGCGTCT GCGGCCGGTG CTGATGACGG CGCTGACCTC GGCGCTGGGG CTGATTCCGA TTTTGCTCTC TAGTGGTGTG GGCAGCGAAA TTCAACAGCC GCTGGCGGTG GTGATTATTG GTGGCCTGTT CAGCTCGACG GCCCTGACAC TGCTGGTACT GCCGACCCTG TATATGGCGC TTTATCGGCA GAATGATCGA GAGCTCGAAG AGCCGGGCTG A
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Protein sequence | MLQKLIEQAV RSRLIVLIFL IGAMAAAAVM LPKLNLDAFP DVTNVQVQVN TAAEGLAAEE VEKLISYPVE SAMYALPSVT EVRSLSRTGL SIVTVVFEEG TDIYFARQQV FEQLQAAREA IPDGVGVPEI GPNTSGLGQV YQYILRAAPE SGIAPDELRS LNDYLVKLIM MPVGGVTDVL SFGGEVRQYQ VQVDPAKLLS YGLKLDDVTR ALEGNNRNAG GWFMAKGQEQ LVVRGYGLLP AGEAGLDAIA QIPLTEWQGT PVRIMDVAQV AFGSEIRVGA VTMTRRDEAG SPQVLGEVVA GVILKRMGAN TKATIDDINS RTALIQQALP DGVTFEVFYD QSDLVTKAVT TVRDALLLAF MFIVAVLALF LVNVRATALV LLSIPVSIAL ALMVMSYFGM SANLMSLGGL AVAIGMLVDG SVVMVENIFR HLTQPEGRVD NGLPTDPGLS EEDAHREGGY GGIAMRILQA AREVCSPIFF ATLIIIVVFA PLFALEGVEG KLFQPMAVSI ILAMLSALMV ALVVVPALAV YLFRRGVHLR QSPLLTPIDK GYRRVLGAVM ARPKTVGITA LVLFGLSMAL LPRLGTEFVP ELEEGTINLR VTLAPTASLD TSLMVAPKLE AMLMEFPEVD YALSRIGAPE LGGDPEPVSN IEIYIGLKPI DEWQSAASRA ELQRLMEEKL SVFPGLLFTF SQPIATRVDE LLSGVKAQLA IKLFGPDLDV LAEKGQQLSE LVSKVPGAVD VSLEQVSGEA QLVVRPDRAR LARYGISVDE VMNLVSTGIG GSDAGQVIDG NARYDINVRL KADTRASADA IADLLLVGAN GARVRLGEVA DVVVEMAPPN IRRDDVQRRV VVQANVSGRD MGSVVKDIYA LVPEADLPPG YTVSVGGQYE NQQRAQARLM LVVPVSIGLI ALLLYFSFGA LKQVGLIMAN VPLALIGGVV ALYVSGTYLS VPSSIGFITL FGVAVLNGVV LVDSINQRRA GGEGLYQAVY EGTAARLRPV LMTALTSALG LIPILLSSGV GSEIQQPLAV VIIGGLFSST ALTLLVLPTL YMALYRQNDR ELEEPG
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