| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3129 |
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| Symbol | |
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| ID | 4605376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3711339 |
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| End bp | 3715049 |
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| Gene Length | 3711 bp |
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| Protein Length | 1236 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782545 |
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| Product | sensory box histidine kinase/response regulator |
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| Protein accession | YP_929001 |
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| Protein GI | 119776261 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCGA CTGAGCCGGA TTTGCAGCTC AAATCGCCTA TTCAGCGCAA TTACAACCGC
GCCGTGTTTT ACACCTACAT AGGTGTAATT GTGATGGCGT GCCTGACCGC CTGGTTTTTC
TTCGACCGGG AAAAGACCCA GCAGCTGGCC CAGCGCGAAG AGCAAATTGA CCGCCATGTA
CTGCAAATCG ACCTCTTGCT GGAGTCCAGC ATACGGGCGG TAAAGAGTTT GCGTGATGTG
GCCGTAGACC ATTTGCGCCT TGGCGAGCTG GTGCGTAAAG ACCGCTTGCC CCAGTACGAA
AAATTCAACG AAGACGGCCA GTACTTCACC CTCGAGCCCC ACTATGCCCA GGGCAATAAA
CCCTTTAATA ACATGGGCCG CATCACGGGC ATTGGTTCCC TTAAGGACAG AAGTGACAAG
TTCTATCAGG AACTGGAAAT GCTGTTCGAG CTGTCTTTGT CTTTCCCGGT GGCCAAAGAG
GCTGCCCCCA AGGCATCGGC CATTTACTAC ATTTCCAAAC GGCGGATGAT GTCGTATTTC
CCCTGGCCGT TGGACGAGCA GCGCTTTCGC GACGAACTGC TGAACAAGAA ACAGTTCCAG
TTGGCGACCC CGGCCATGAA CCCCCAGCGC AGCGTGTTCT GGAGTGAGGC CTATCTCGAC
TCCACCGACA AGGGGCTGCT GACCACCCTG GGTGTGCCCA TTTACCTCGA AGATGAGTTT
ATTGGCTCCA TCAATCTGGA CATGACCCTG GCGTCGCTTG CGCGGCAAAT CCGTCTCTAC
TTCAAGATGC CGGGCACGGT CATCCTGCTC GACCAGAGCA ACAACATACT GTCCCACTCC
GACATGGCGG GCAACGACCT CAAACGGGTG CTGCACATCA GCCAGAAAAT CCCCTCTGAG
CTGCACTCGC TGCCGGAGTC AGAACTCTTC GATGCCCAGG GCGGCATTAT CCGTAACGGT
TACTACATTC ACTCGGTGGC ACTGCACAAT GCGCCCTGGC GTCTGCTGTA CATACAGGAT
GTGGACGACC TCTTTCAGGA GAGCTGGGAC AAGCTGCAGC TGACTTTCAT TCTGGTGGTT
CTGGCGCTCT CAGTGCTGGT GACCATAGTG CACTGGCAGA CCCGCCGCTC CTTCGTAAGC
CCTGCATCAA GGCTGCTGTC ACACCTCGAA GGCTGCTCCC AGCAACCCCG TGCAGTACCG
GAAAAAATCA CCCCGGGCTG GGAGCCATGG TTCCAGCTGG TAAGTCGTAT TTTTGAAGAA
AACCAGCAAT ATACCAAACA CCTGGCCGAG CAGAATAAGC GCCTCGACAA GCTGGTGGCG
CGCCGCACCG AGCGTCTAAA AGAAACCACA GAGCGCCGCG AGCGCGAATA CGCGTTGCTG
CGCTCTTTGC TCGACTCCAT CCCCGAGGCC ATTGTCTTCA AAGACAAGGA AGGCCATTAC
CTTGGCTGTA ACAAGGCCGC CGAGCGTATG TTGGGCTTCA GCGAGGCCGA GATGATTGGC
CTGTCCAGCG AGGAGCTGAC ATCACCGGAG CAGGGCAGCC GCATCCGTGC CGAAGACGAG
CAGGTACTGA CAGAACGCAA GCCGCTGCGC TATCAGGAAA AAATCGAACT GGCTGGCAAA
CCTGTGCTGC TCGATACCCT CAAACTGCCC TTCTACAATC GCCGTGGTGA GCTGATGGGC
CTGATTGCAG TGTGGCGTGA TGTTACCCGA GAATACGAAT CTGCCGAGCA ATTACGGCTG
TCGGAAGAGC GATACCACCT CGCCATGGAC GCGGTGGAAG ATGGCCTGTG GGACTGGTAT
CTCGACTCAG AGCAAATCAT CTGCAACCCG GCCTATTACT CCATGCTGGG TTACAAGACC
AACGAGTTCC CGGCACTGCT CTCCACCATC GACAGCCTGA TCCATCCGGA CGACCGCATC
CGGGTGCAGG AATACCGCGA GCAGTACCTG AAAGACCCCA TTGGCGCCTA CGAGATTGAG
TTCCGGATGC GCGCCAAAAC GGGCCAGTAC CATTGGATGC TGAGCCGTGG CCGGGTAGTG
GAATTTACCC AGGATGCCCA GCCCAAGCGG ATGGTGGGTA CCCACAAAGA TATTACCCGT
CACAAGAGTA ACGAAGTGGC GCTGCTTGAG GCCAAGCAGG ATGCGGAGCT GGCCAACCTC
TACAAGAGTG AATTCCTGGC CAATATGAGC CATGAAATCC GCACCCCAAT GAACGCCATC
ATAGGTATGT TGCAACTGGC GGGGCGCACC AGCCTGACCG AGCAGCAAAA GGATTACCTG
GATAAGGCGA GCTTCTCGGC CCAGTCGCTG CTGCGCATCA TCAACGACAT CCTCGACTTC
TCCAAGATTG AAGCCGGTAA GCTGGAGCTG GAAAAAGTCG CCTTCCCGCT GGACAAGGTG
CTGGACCACT CACTGGATCT CAACGCCCTG CGGGCGCAGG AAAAGGGTAT TGAACTCCTG
CTGTACGCCC CTGTATCGGC GGGCATCATG CTCAAGGGCG ACCCGCTGCG TTTGGGGCAG
GTGCTGATTA ACCTCCTGTC CAACGCCGTG AAGTTTACCC AAAACGGTGA AATTGAACTC
GGCTGTGAAG ATGTGGGCGA GCGCGACCAC CGCATCACCC TCAAGTTCTG GGTGCGGGAT
ACCGGTATCG GCATCAGCCG CGAGCAGCAG GACAAGCTGT TCGATGCCTT TGCCCAGGCC
GATGGTTCCA CCACCCGCAA GTACGGCGGT ACGGGCCTTG GCCTGTCCAT CAGTAAACAT
CTGGTGTCCA TGATGGGCGG TACCATGCAG GTGGAGAGTG AGCCCGGCGT GGGTTCCACC
TTCAGCTTTA CCGTGAGTTT TGAAATCGCC GAAGAGGCCA AGGTCGTCCC CATGGTGGTG
CCCGAGCGTC TGGCGAGCCT GCGTACCCTG GTGGTGGACG ATAACCCCAC GGCGCTGCAG
ATTTATTCCA GTGTGATGCG CGACTTCCAC TTTGAAGTGG AAACCGCCTC CACCGGCGCC
GAGGCCCTGT ACAAGCTCTG CAAACAGCAG GTGGATCTGG TGCTGCTCGA CTGGATGATG
CCCGAGATGG ACGGCATTCA GGTGATAGAT GCCATCGATG AGATGGTGGC CGAAGGCAAG
CTTGCTGCCC GGCCGGTGAT TATCATCATG ACCGCCTACG CAGCCGAGCC GCTGAAGGTG
GATCTCGACA GTGATCGCGT GTTTGCCATG CTGCAAAAGC CGTTCAAGGC ATCCAGCCTG
TTCGATGAAA TCATCCGCGC CTTTGCCCCG CCCGCCCCCA AAGCGCTGCC CGCACCGCCG
GTGGAGGATG AGGGTGAACA TCAGGGCGTG GTGCTCTTGG TGGAAGATAA CTTTATCAAC
CAACAGGTGG CCACCGAGCT TTTGAAGAGC GCCGGTTATG AAGTGGATGT GGCCGACAAC
GGCCAGATAT CGCTGGAGAT GGTGGGCAAG CGCAGTTACG ATGCGATACT CATGGATATT
CAAATGCCTG TGATGGATGG CCTCACGGCG GCAACTGAGC TGCGTAAGCG CTACAGCTTC
GATGAGCTGC CGATTATCGC CATGACAGCC CACGCCATGT CCGGCGACCG GGAAAAGAGC
CTCGCCGCTG GCATGAATGC CCACATTACC AAGCCCATAG TGCTCAACGA ACTCTTTGAA
ACCCTGAGCC ACTGGATAGG ACATAAAGAA AAACACAGGG GCAACCCCTA G
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| Protein sequence | MKSTEPDLQL KSPIQRNYNR AVFYTYIGVI VMACLTAWFF FDREKTQQLA QREEQIDRHV
LQIDLLLESS IRAVKSLRDV AVDHLRLGEL VRKDRLPQYE KFNEDGQYFT LEPHYAQGNK
PFNNMGRITG IGSLKDRSDK FYQELEMLFE LSLSFPVAKE AAPKASAIYY ISKRRMMSYF
PWPLDEQRFR DELLNKKQFQ LATPAMNPQR SVFWSEAYLD STDKGLLTTL GVPIYLEDEF
IGSINLDMTL ASLARQIRLY FKMPGTVILL DQSNNILSHS DMAGNDLKRV LHISQKIPSE
LHSLPESELF DAQGGIIRNG YYIHSVALHN APWRLLYIQD VDDLFQESWD KLQLTFILVV
LALSVLVTIV HWQTRRSFVS PASRLLSHLE GCSQQPRAVP EKITPGWEPW FQLVSRIFEE
NQQYTKHLAE QNKRLDKLVA RRTERLKETT ERREREYALL RSLLDSIPEA IVFKDKEGHY
LGCNKAAERM LGFSEAEMIG LSSEELTSPE QGSRIRAEDE QVLTERKPLR YQEKIELAGK
PVLLDTLKLP FYNRRGELMG LIAVWRDVTR EYESAEQLRL SEERYHLAMD AVEDGLWDWY
LDSEQIICNP AYYSMLGYKT NEFPALLSTI DSLIHPDDRI RVQEYREQYL KDPIGAYEIE
FRMRAKTGQY HWMLSRGRVV EFTQDAQPKR MVGTHKDITR HKSNEVALLE AKQDAELANL
YKSEFLANMS HEIRTPMNAI IGMLQLAGRT SLTEQQKDYL DKASFSAQSL LRIINDILDF
SKIEAGKLEL EKVAFPLDKV LDHSLDLNAL RAQEKGIELL LYAPVSAGIM LKGDPLRLGQ
VLINLLSNAV KFTQNGEIEL GCEDVGERDH RITLKFWVRD TGIGISREQQ DKLFDAFAQA
DGSTTRKYGG TGLGLSISKH LVSMMGGTMQ VESEPGVGST FSFTVSFEIA EEAKVVPMVV
PERLASLRTL VVDDNPTALQ IYSSVMRDFH FEVETASTGA EALYKLCKQQ VDLVLLDWMM
PEMDGIQVID AIDEMVAEGK LAARPVIIIM TAYAAEPLKV DLDSDRVFAM LQKPFKASSL
FDEIIRAFAP PAPKALPAPP VEDEGEHQGV VLLVEDNFIN QQVATELLKS AGYEVDVADN
GQISLEMVGK RSYDAILMDI QMPVMDGLTA ATELRKRYSF DELPIIAMTA HAMSGDREKS
LAAGMNAHIT KPIVLNELFE TLSHWIGHKE KHRGNP
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