Gene Sama_3115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3115 
Symbol 
ID4605362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3692979 
End bp3695285 
Gene Length2307 bp 
Protein Length768 aa 
Translation table11 
GC content51% 
IMG OID639782531 
Productputative diguanylate phosphodiesterase 
Protein accessionYP_928987 
Protein GI119776247 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0443843 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAATA GTTTTCGTGC CCGGCTGATT TTGGTTTTCT TTACCGTGCT GACTTTGGTG 
CAGTTTGCCA CGGCATTTTC GGTGCTGACG GCAACCCAGA GAGATAACTT TTTACAGCAA
CAAAAGAGCC TTGAAATCGG CGCGAATGTG TTTCGTGAAG TGCTGTCCAA TCGCGGTATT
CAGCTCAGTC AAAGCCTGTC GGTGCTCAGT GCCGACTTTG GCTTTAAGCG TGCCATTGCA
ACGAGAGAGC AAGAAACCAT TGAGTCGGTA TTGTCCAATC ATGGTGCCCG TATCGGGGCT
GATGCGGCCG TCTTGTTGTC ACCCAAGGGA GAACTGTTAA CCTCAAGCCT GCCGGGGCTG
ACGCAGGATG ATATACAGTC GCTGTTCCAA TTGACCATCA ACAACGCCAA TGCCCTGGCG
ATTCTCGAGT TTGACCATGC CAGTTATCAA TTCGTGCAGC AGCCCGTGAA AGCCCCAACC
CTGATAGCCT GGGTTGGCAT GGGCTTTCTG CTCGATGAAA AAGTGGCCAG CCAAGCCAAA
GCCATTACCG GAATTGATGT CAGCTTTGTT AATCAAACCA AGGGCCGGAC AGAAATAGCC
TCCACCTTAT CCAGCAGCGA AAAACAGACA GTGATTGCAC AGGCAAACCA ATTCCCAAGC
CTGTTAACGC TGCCCAGCGA GACCATTCCT GCGGACCATT TATCCATGGC AATCAAGCTG
TATGAGCATA ATGGCAACCA GTTGGCGCTG CTGCACCAGT CAAACCTCAA GTGGCAACAA
AGTTATCAGC AGCTGCGCAA TAACATGCTC GCTATCTTTG CCCTGACACT GGCGCTGGCG
ATTGCCGTGG CCATTTGGTT GTCGGGCAGT TTGACTGAGC CAGTTCATCG ATTGGTGCTA
TATGCCCGTC AAATTGGTCA GGGTAAGCAG CCGGAAAGCA TTCAGGGTGC CCCAGCGGAA
TTACGTGTCT TGGCCAAAAG CTTGTCTTTG ATGCGGGATG ATATTGAGGC GCGCGAAAAA
GACTTGGTAT ACCAGTCTCG CCACGACAGT TTGACAGGCT TGCTGAATCG TTTCGCGGCA
AAACAGTATT TAACCGACCT TAAACAGCAT CTGTCCGGCA CCATAGTATT GCTGGATATC
AAGCATTTTC GCCATATCAA CGACATTATT GGGTTTGCCA ACGCCGATGC CTTATTGCTG
CTGTTTGCCC GCCGTCTGGA GCAGCTGGCA CCCAAAGCGG ATATGCTGGC CCGGTTGGAT
GGCGATTCGT TTTTACTCCT TTACCGCCAG AGTATTTCGC ACGACCTCTT ACTCAAATCC
CTGGATATGT TGGAGGCGCC CTTTCCTATT CAGGGTTCCA ATATCTCCCT TGGGGTGCGG
GCAGGATTGC TCGAAATCGA TGGCAATGGT GCCGACATTG ATGTGTTAAT GCGCCGCGCC
GAAATTGCCC TCAATCAGGC CTGTCTTCAG GAGCAGCGTA TCGTCAGTTA TCGTGCAGGC
GACGATGAAA AGTACCAGCG AGAACTTACG CTTATCCGTG ATTTACCCAT AGGGCTGGCC
CAGGACCAAC TCTATCTGGT GTTTCAGCCC AAAATTGACC TGCGCCTCAA TCGCTGCACG
GGTGCCGAGG CATTAATTCG ATGGCAACAC CCAACGCTGG GTTTTATTCC CCCCGATGAA
TTTATTCAGC TCGCCGAAAA CTCGGGCAAC ATTGATATCA TCAGCCAATG GGTATTGAAG
CAAGCCATCA AGCAGTTGGT TGCATGGCAG CAGCGGGGGG TGGCGCTGAA ATTAGCCATT
AACCTCTCGG CCCATGATTT GAGTGATACC CGCTTGCCAA ACCAGATTTC CACCCTCTTA
AAAGACAATC ATCTGCCAAG CGGCGTGCTC TGTATTGAAG TTACCGAAGG CGCTGTGATG
ACAGACGCGC AAACCGTAGT GGGTGTATTG CAGCAATTCC GCGACATGGG TGTGTCGGTT
GCTATTGATG ATTTTGGTAC CGGGCATTCA TCGTTGGCGT ATTTGAAAAT GTTGCCCGTC
GATGAAGTGA AAATTGACCG CAGCTTCATC CAACATATCC ACAGCAACAG CCAGGACGCC
ATGATAGTCA ATACCAGTAT TCAGCTGATC CACGGCCTGG GTTTCAGCGT GGTGGCCGAG
GGCGTCGAAG ATGAGGCAGG GGTTGACATG CTTCGCAAGC TTAACTGCGA CATCATCCAG
GGCTACGTAT TTTCCAAGCC CTTGAAAGCG GCCGAATTTG ACCAGTGGTT TGACGCCTTT
CATGGAAAAG GCACCGGAGA GATTTGA
 
Protein sequence
MLNSFRARLI LVFFTVLTLV QFATAFSVLT ATQRDNFLQQ QKSLEIGANV FREVLSNRGI 
QLSQSLSVLS ADFGFKRAIA TREQETIESV LSNHGARIGA DAAVLLSPKG ELLTSSLPGL
TQDDIQSLFQ LTINNANALA ILEFDHASYQ FVQQPVKAPT LIAWVGMGFL LDEKVASQAK
AITGIDVSFV NQTKGRTEIA STLSSSEKQT VIAQANQFPS LLTLPSETIP ADHLSMAIKL
YEHNGNQLAL LHQSNLKWQQ SYQQLRNNML AIFALTLALA IAVAIWLSGS LTEPVHRLVL
YARQIGQGKQ PESIQGAPAE LRVLAKSLSL MRDDIEAREK DLVYQSRHDS LTGLLNRFAA
KQYLTDLKQH LSGTIVLLDI KHFRHINDII GFANADALLL LFARRLEQLA PKADMLARLD
GDSFLLLYRQ SISHDLLLKS LDMLEAPFPI QGSNISLGVR AGLLEIDGNG ADIDVLMRRA
EIALNQACLQ EQRIVSYRAG DDEKYQRELT LIRDLPIGLA QDQLYLVFQP KIDLRLNRCT
GAEALIRWQH PTLGFIPPDE FIQLAENSGN IDIISQWVLK QAIKQLVAWQ QRGVALKLAI
NLSAHDLSDT RLPNQISTLL KDNHLPSGVL CIEVTEGAVM TDAQTVVGVL QQFRDMGVSV
AIDDFGTGHS SLAYLKMLPV DEVKIDRSFI QHIHSNSQDA MIVNTSIQLI HGLGFSVVAE
GVEDEAGVDM LRKLNCDIIQ GYVFSKPLKA AEFDQWFDAF HGKGTGEI