Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3115 |
Symbol | |
ID | 4605362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3692979 |
End bp | 3695285 |
Gene Length | 2307 bp |
Protein Length | 768 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639782531 |
Product | putative diguanylate phosphodiesterase |
Protein accession | YP_928987 |
Protein GI | 119776247 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0443843 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAATA GTTTTCGTGC CCGGCTGATT TTGGTTTTCT TTACCGTGCT GACTTTGGTG CAGTTTGCCA CGGCATTTTC GGTGCTGACG GCAACCCAGA GAGATAACTT TTTACAGCAA CAAAAGAGCC TTGAAATCGG CGCGAATGTG TTTCGTGAAG TGCTGTCCAA TCGCGGTATT CAGCTCAGTC AAAGCCTGTC GGTGCTCAGT GCCGACTTTG GCTTTAAGCG TGCCATTGCA ACGAGAGAGC AAGAAACCAT TGAGTCGGTA TTGTCCAATC ATGGTGCCCG TATCGGGGCT GATGCGGCCG TCTTGTTGTC ACCCAAGGGA GAACTGTTAA CCTCAAGCCT GCCGGGGCTG ACGCAGGATG ATATACAGTC GCTGTTCCAA TTGACCATCA ACAACGCCAA TGCCCTGGCG ATTCTCGAGT TTGACCATGC CAGTTATCAA TTCGTGCAGC AGCCCGTGAA AGCCCCAACC CTGATAGCCT GGGTTGGCAT GGGCTTTCTG CTCGATGAAA AAGTGGCCAG CCAAGCCAAA GCCATTACCG GAATTGATGT CAGCTTTGTT AATCAAACCA AGGGCCGGAC AGAAATAGCC TCCACCTTAT CCAGCAGCGA AAAACAGACA GTGATTGCAC AGGCAAACCA ATTCCCAAGC CTGTTAACGC TGCCCAGCGA GACCATTCCT GCGGACCATT TATCCATGGC AATCAAGCTG TATGAGCATA ATGGCAACCA GTTGGCGCTG CTGCACCAGT CAAACCTCAA GTGGCAACAA AGTTATCAGC AGCTGCGCAA TAACATGCTC GCTATCTTTG CCCTGACACT GGCGCTGGCG ATTGCCGTGG CCATTTGGTT GTCGGGCAGT TTGACTGAGC CAGTTCATCG ATTGGTGCTA TATGCCCGTC AAATTGGTCA GGGTAAGCAG CCGGAAAGCA TTCAGGGTGC CCCAGCGGAA TTACGTGTCT TGGCCAAAAG CTTGTCTTTG ATGCGGGATG ATATTGAGGC GCGCGAAAAA GACTTGGTAT ACCAGTCTCG CCACGACAGT TTGACAGGCT TGCTGAATCG TTTCGCGGCA AAACAGTATT TAACCGACCT TAAACAGCAT CTGTCCGGCA CCATAGTATT GCTGGATATC AAGCATTTTC GCCATATCAA CGACATTATT GGGTTTGCCA ACGCCGATGC CTTATTGCTG CTGTTTGCCC GCCGTCTGGA GCAGCTGGCA CCCAAAGCGG ATATGCTGGC CCGGTTGGAT GGCGATTCGT TTTTACTCCT TTACCGCCAG AGTATTTCGC ACGACCTCTT ACTCAAATCC CTGGATATGT TGGAGGCGCC CTTTCCTATT CAGGGTTCCA ATATCTCCCT TGGGGTGCGG GCAGGATTGC TCGAAATCGA TGGCAATGGT GCCGACATTG ATGTGTTAAT GCGCCGCGCC GAAATTGCCC TCAATCAGGC CTGTCTTCAG GAGCAGCGTA TCGTCAGTTA TCGTGCAGGC GACGATGAAA AGTACCAGCG AGAACTTACG CTTATCCGTG ATTTACCCAT AGGGCTGGCC CAGGACCAAC TCTATCTGGT GTTTCAGCCC AAAATTGACC TGCGCCTCAA TCGCTGCACG GGTGCCGAGG CATTAATTCG ATGGCAACAC CCAACGCTGG GTTTTATTCC CCCCGATGAA TTTATTCAGC TCGCCGAAAA CTCGGGCAAC ATTGATATCA TCAGCCAATG GGTATTGAAG CAAGCCATCA AGCAGTTGGT TGCATGGCAG CAGCGGGGGG TGGCGCTGAA ATTAGCCATT AACCTCTCGG CCCATGATTT GAGTGATACC CGCTTGCCAA ACCAGATTTC CACCCTCTTA AAAGACAATC ATCTGCCAAG CGGCGTGCTC TGTATTGAAG TTACCGAAGG CGCTGTGATG ACAGACGCGC AAACCGTAGT GGGTGTATTG CAGCAATTCC GCGACATGGG TGTGTCGGTT GCTATTGATG ATTTTGGTAC CGGGCATTCA TCGTTGGCGT ATTTGAAAAT GTTGCCCGTC GATGAAGTGA AAATTGACCG CAGCTTCATC CAACATATCC ACAGCAACAG CCAGGACGCC ATGATAGTCA ATACCAGTAT TCAGCTGATC CACGGCCTGG GTTTCAGCGT GGTGGCCGAG GGCGTCGAAG ATGAGGCAGG GGTTGACATG CTTCGCAAGC TTAACTGCGA CATCATCCAG GGCTACGTAT TTTCCAAGCC CTTGAAAGCG GCCGAATTTG ACCAGTGGTT TGACGCCTTT CATGGAAAAG GCACCGGAGA GATTTGA
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Protein sequence | MLNSFRARLI LVFFTVLTLV QFATAFSVLT ATQRDNFLQQ QKSLEIGANV FREVLSNRGI QLSQSLSVLS ADFGFKRAIA TREQETIESV LSNHGARIGA DAAVLLSPKG ELLTSSLPGL TQDDIQSLFQ LTINNANALA ILEFDHASYQ FVQQPVKAPT LIAWVGMGFL LDEKVASQAK AITGIDVSFV NQTKGRTEIA STLSSSEKQT VIAQANQFPS LLTLPSETIP ADHLSMAIKL YEHNGNQLAL LHQSNLKWQQ SYQQLRNNML AIFALTLALA IAVAIWLSGS LTEPVHRLVL YARQIGQGKQ PESIQGAPAE LRVLAKSLSL MRDDIEAREK DLVYQSRHDS LTGLLNRFAA KQYLTDLKQH LSGTIVLLDI KHFRHINDII GFANADALLL LFARRLEQLA PKADMLARLD GDSFLLLYRQ SISHDLLLKS LDMLEAPFPI QGSNISLGVR AGLLEIDGNG ADIDVLMRRA EIALNQACLQ EQRIVSYRAG DDEKYQRELT LIRDLPIGLA QDQLYLVFQP KIDLRLNRCT GAEALIRWQH PTLGFIPPDE FIQLAENSGN IDIISQWVLK QAIKQLVAWQ QRGVALKLAI NLSAHDLSDT RLPNQISTLL KDNHLPSGVL CIEVTEGAVM TDAQTVVGVL QQFRDMGVSV AIDDFGTGHS SLAYLKMLPV DEVKIDRSFI QHIHSNSQDA MIVNTSIQLI HGLGFSVVAE GVEDEAGVDM LRKLNCDIIQ GYVFSKPLKA AEFDQWFDAF HGKGTGEI
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