| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3098 |
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| Symbol | |
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| ID | 4605345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3671396 |
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| End bp | 3673312 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639782514 |
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| Product | GGDEF family protein |
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| Protein accession | YP_928970 |
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| Protein GI | 119776230 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0791415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCAA CACCATCAGG GATAAACACA CTGCCAATGC CACAGATAAA TACCAAAACC
ATCAGTGTGC CCGATGCCAT GCTGTGCGGC TGGCAGGAGA TTGTTGATTT GGTGGCTGAT
ATCACCGAAT GCCCTTCCGC GCTTATCATG CGTATCCATG AAGACGACAT TGAGGTATTC
GCCAGCAGCC GCTCGGCAGG CAATCCCTAT GTTCCCCACG CCCGGGACGC ATTGGGTCAC
GGCCTTTATT GCGAAACCGT GATCCGTGAG CGGCAGCAAC TGGAGGTGCC CAACGCCCTC
AAAGACCCCG AATGGGCCAA TAACCCGGAT ATCAAACTGG GGATGATTTG CTACTGTGGC
CTGCCTATCT TCTGGCCCGA TAACACCCCC TTCGGCACCA TCTGCATCCT GGACAACAAA
GAAAGACACT TCAACGACAG GGTTCACGCT CTGCTGGGGC GCTTCCAATC TGCCCTGGAA
GGACATTTGC AGATCCTTTA CCACAAGTCC GAGTTGAAAG TGCTTAATGA GGAGCTGGAG
CATAAGGTGC AGGAGCGCAC CCAGCGGCTT GCCGAGCTAA GCGCCCGATT GCTCAAAGAG
ATTGAACAGC GCACCGCCGC CGAAGGACAT TTGGAGTTTC ACCGTACCTT TGACCCCTTA
ACCCATTTGC CCAATCGTGC AACCCTCACC GAAAGGCTGC AAACGTTGCT GCCGAAACTG
AAAAAAGATG AACACCTGAC ACTTATCTAC TTTGGGCTGC GCAATTTCAA ATCGGTCAAC
GACAGCTACG GCTACCTCAC CGGCGACTCA ATTCTGGTGA GTCTGAGTCA ACGACTGAGC
CTTAAGCTGC CCGACAACTG GCTGCTGGCA CGTATCGCAG GGTCGGAGTT TGTTCTGGCA
GCACTGCACA ACGCCAGCAC AGAGATGACA GAGCAGGTCA TTGCACGGGT ACTGAGCGAC
TGCTCAGTAC CTTTCACCGT GAACACCAAC AGCATTACGG TCCAAACCAA CCTGGGTGTG
GCCATTGCGC CGGTGGACGC CACCGACTCG GTCAGCCTGC TGCAACGCGC CAGTGCTGCC
ATGAGCATTG CCAAAAAAGA AGGCGCTGTG GTGTCTTTTT TCGGTCAGGA AACCCAAAAA
GCGGCCCACG AGCGATTGCT GCTGGAGTCA CATCTGCTGG ATGCGCTGCA TCAGGGCGAA
CTCGCGGTGT ATTTTCAGCC TCTGGTGTCC GTTCGGGATA AGAAGCGCCT GGTTGGCGCC
GAAGCACTGC TGCGCTGGCA CAGCCCTGAA CTGGGGAATG TTGGCCCGGA CCGCTTTATT
CCACTGGCCG AAAGTAATGG GCAAATTATT GAAATAGGTA ACTTTGTTCT GCACGAGGCG
ATGAAACATG CCGCCCACTG GTGCAAGCGG AGCAATAATC CCTTCAAGAT AGCCATCAAT
ATTTCACCGC TGCAGTTTCG TGAGCGACAG TTTGTCGAGC ATATCGAAGA TCTGCTCGAT
TTGTATGAAT TGCCCCCCGG CACGTTGGAG CTTGAAATCA CTGAAGGCAT TTTGCTGCAG
GATGAACACC ATGCCAGGGC AAGTCTGGCG CGACTGCGTC ATCTGGGGGT GCAGATATCT
CTGGATGACT TTGGCACCGG CTATTCATCA CTGAGCTATC TGCAAAAGTA TGCCTTCGAT
ACTCTGAAAA TCGATCGCAG CTTTATCAGT AATCTTGAGT TCAACGAACA AAATCGTGAG
CTGACCCGGG CCATTATTGC CATGGCGCAC AAGCTGAAGC TAAACGTGGT TGCTGAAGGG
GTTGAGAATG CCTTTCAGGA GGCCTTTATC CAGGCCGAGG AATGTGATTT TGCCCAGGGC
TATCTGTATG GTAAGGCCAT ACCCGCAGAG AAGTTTGCGG AAAAGTTCAC CCATTAA
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| Protein sequence | MTSTPSGINT LPMPQINTKT ISVPDAMLCG WQEIVDLVAD ITECPSALIM RIHEDDIEVF
ASSRSAGNPY VPHARDALGH GLYCETVIRE RQQLEVPNAL KDPEWANNPD IKLGMICYCG
LPIFWPDNTP FGTICILDNK ERHFNDRVHA LLGRFQSALE GHLQILYHKS ELKVLNEELE
HKVQERTQRL AELSARLLKE IEQRTAAEGH LEFHRTFDPL THLPNRATLT ERLQTLLPKL
KKDEHLTLIY FGLRNFKSVN DSYGYLTGDS ILVSLSQRLS LKLPDNWLLA RIAGSEFVLA
ALHNASTEMT EQVIARVLSD CSVPFTVNTN SITVQTNLGV AIAPVDATDS VSLLQRASAA
MSIAKKEGAV VSFFGQETQK AAHERLLLES HLLDALHQGE LAVYFQPLVS VRDKKRLVGA
EALLRWHSPE LGNVGPDRFI PLAESNGQII EIGNFVLHEA MKHAAHWCKR SNNPFKIAIN
ISPLQFRERQ FVEHIEDLLD LYELPPGTLE LEITEGILLQ DEHHARASLA RLRHLGVQIS
LDDFGTGYSS LSYLQKYAFD TLKIDRSFIS NLEFNEQNRE LTRAIIAMAH KLKLNVVAEG
VENAFQEAFI QAEECDFAQG YLYGKAIPAE KFAEKFTH
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