| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2965 |
|---|
| Symbol | |
|---|
| ID | 4605212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3529208 |
|---|
| End bp | 3530398 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639782376 |
|---|
| Product | putative SAM-dependent methyltransferase |
|---|
| Protein accession | YP_928837 |
|---|
| Protein GI | 119776097 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1092] Predicted SAM-dependent methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.545858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC GCATCAAACT CAAGCCGGGA CGGGAAAAGT CCCTCGACCG TCGTCACCCC
TGGGTGTTCT CCAGTGGCGT ACACAACATC AAGGGCAAGC CCCTGCGCGG TGAAACCGTG
GATGTAGTGG CCCACGATGG CCGCTGGCTT GGCCGCGGTG CCTGGTCAGA TGCCTCACAG
ATTCAGGTGC GTGTCTGGAC CTTCGATAAA GAAGAGGCCA TCGATCGTGA CTTTTTCGCC
CGCCGTATCG CCCGTGCCCA GGCTGGCCGC GAGGCGCTTA TCCGCGAAAA GGGCCTCACC
GGCTATCGTC TGGTGGGCGC CGAGTCTGAC GGCCTGCCCG GTATCACCAT CGACCGCTAC
GCCAATGTGC TGGTGTGTCA GTTGCTGTCT GCCGGTGCTG ATTATTGGCG CGAGACCCTG
GTATCAGTAC TCGCCGAGCA GTTCCCGGAG TGTGCCATTT ACGAGCGCTC TGACGTGGAC
TCACGTAAGA AAGAAGGCCT GCCACTGGTG ACGGGTTTGC TCCACGGAGA GCTGCCTGCC
ATGCCGCTGA TTATTGAAGA AAACGGCATC AAGATTGCCG TCGATGTGGA AAAGGGCCAC
AAGACCGGCT TTTATCTCGA CCAGCGCGAC AACCGCGCCA TGGCTGGGCG CTTTGTGGAA
GGCAAGTCGG TACTCAACTG TTTCTGTTAC ACAGGCACCT TCGGCCTCTA CGCCGCCAAG
GCCGGAGCCG CCAGTATCGA AAACGTGGAC GTATCCACCC TGGCGCTGGA TACTGCCCGT
CACAACATGG CCATCAATGG CCTTAACGAC GACCATGTGA CTTACAGCGA AGCCGATGTA
TTCAAGCTGT TGCGCCAGTA CCGCGACGAA GGCAAAACCT TCGATGTGAT AGTGCTCGAC
CCGCCCAAGT TTGCCGATAA CAAGGCCCAG CTCAATGGCG CCTGCCGTGG CTACAAGGAC
ATCAACATGA TTGCCATGCA GCTATTGAAG CCCGGCGGCA CCCTGCTGAC CTTCTCCTGC
TCCGGCCTGA TGCCCGCCGA CCTGTTCCAG AAAATTGTCG CCGATGCCGC ACTGGATGCA
GGCCGCGACG CCCAGTTTAT CGAGCGCCTG AGCCAGGCCT CGGACCACCC CATCGGCGCC
GCCTTCCCGG AAGGTTTCTA CCTCAAGGGG CTCGTTGCCC GGGTTTGGTA A
|
|---|
| Protein sequence | MSIRIKLKPG REKSLDRRHP WVFSSGVHNI KGKPLRGETV DVVAHDGRWL GRGAWSDASQ
IQVRVWTFDK EEAIDRDFFA RRIARAQAGR EALIREKGLT GYRLVGAESD GLPGITIDRY
ANVLVCQLLS AGADYWRETL VSVLAEQFPE CAIYERSDVD SRKKEGLPLV TGLLHGELPA
MPLIIEENGI KIAVDVEKGH KTGFYLDQRD NRAMAGRFVE GKSVLNCFCY TGTFGLYAAK
AGAASIENVD VSTLALDTAR HNMAINGLND DHVTYSEADV FKLLRQYRDE GKTFDVIVLD
PPKFADNKAQ LNGACRGYKD INMIAMQLLK PGGTLLTFSC SGLMPADLFQ KIVADAALDA
GRDAQFIERL SQASDHPIGA AFPEGFYLKG LVARVW
|
|---|
| |