Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2953 |
Symbol | |
ID | 4605200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3514745 |
End bp | 3516139 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639782364 |
Product | sodium:alanine symporter family protein |
Protein accession | YP_928825 |
Protein GI | 119776085 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1115] Na+/alanine symporter |
TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.206004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTTC ACGCACTGCT GACGCAGTTG AACGCTATTG TTTGGGGTCC TGTGACCCTG TGTTTGTTGG TGGGTACCGG TGTGTACTTC ACCGTTCGTT TAAAGCTGTT GCAGCTGGTC AAATTACCCC TCGCCCTGTC ACTGCTCTTT AAACCCGCCT CAGGGAAGGG GGAGCTGTCG TCCTTTGGGG CGCTTTGCAC CGCACTCTCG GCCACCATAG GCACGGGCAA CATAGTGGGG GTCGCCACCG CCATCAAGCT CGGTGGCCCG GGTGCGCTGT TTTGGATGTG GGTGGCGGCC TTTTTTGGCA TGGCCACCAA ATACGCCGAG TGTTTGCTGG CGCTCAAATA CCGCACCACC GACGCCAGGG GCAATATCGC CGGTGGCCCC ATGTATTACA TTGAACGCGG ACTTGGCCTG GGCTGGCTCG CCAGGCTCTT TGCCATTTTC GGGGTAGGTG TGGCCTTTTT CGGTATAGGT ACCTTCGCCC AGGTCAATGC CATCAGCGAT GCCATGACGG TGGCCTTTGC CGTGCCCACC TGGGTGACTG CCAGCGTGCT GACCCTGCTG GTGGCGGCCG TGACGTTAGG CGGCGTTAAG CGCATCGCTT CGGTTGCCCA AACTCTGGTG CCCGCCATGG CCATCGGCTA TGTGCTGGCT TGCCTTTGGG TACTGCTGAG TCTCCATGAC GCCATAGTGC CGGCCCTTTC TTTGGTGGTG AATGGGGCCT TTACCCCGGT TGCCGCCGGG GGCGGCTTTT TGGGGGCGAC TGTGGCGCTG GCGATTCAAA CCGGTATCGC CCGTGGGGTA TTCTCCAACG AGTCCGGCCT TGGCAGCGCA CCCATTGCGG CGGCAACTGC ACGCACCAAA GAGCCGGTGG AGCAGGGGCT GGTGAGCATG ACTGGCACCT TTTTCGATAC CCTGATTATC TGCACCATGA CAGGATTGGT GCTTATCATC ACTGGTGTAT GGAGTGGCGA CAGCGCCGGA GCAGCCATGA CCAGCGCTGC TTTTTCCGCG GCGACAAACC CCTTGCTGGG GCAATATCTG GTGACAGTGG CGCTGGTGTG TTTTGCCTTT ACCACCATTC TGGGCTGGAA CTACTACGGC GAGCGCTGCT GGAGCTATCT CACCGGGGGC CGTTATGCCG GTCTGTACCG GCTGGTCTTC TTGCTGCTGA TTGCTGGCGG TGCCTTTATC AAGCTCGACC TGATATGGCT CCTTGCTGAC ATCGTCAATG GCCTGATGGC CATCCCCAAC CTGATAGCGC TGATTGGCCT GCGCAGCGTC ATCCTTGCCG AAAGTCAGCG CTATTTTGGC ATGCTGGCCA TGCCGGGCGG GAACGCTGCG CTGCCAAGCC GTGCAAAAGA GGCTGAAGAT GGCCTGGTGA GTTAA
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Protein sequence | MDFHALLTQL NAIVWGPVTL CLLVGTGVYF TVRLKLLQLV KLPLALSLLF KPASGKGELS SFGALCTALS ATIGTGNIVG VATAIKLGGP GALFWMWVAA FFGMATKYAE CLLALKYRTT DARGNIAGGP MYYIERGLGL GWLARLFAIF GVGVAFFGIG TFAQVNAISD AMTVAFAVPT WVTASVLTLL VAAVTLGGVK RIASVAQTLV PAMAIGYVLA CLWVLLSLHD AIVPALSLVV NGAFTPVAAG GGFLGATVAL AIQTGIARGV FSNESGLGSA PIAAATARTK EPVEQGLVSM TGTFFDTLII CTMTGLVLII TGVWSGDSAG AAMTSAAFSA ATNPLLGQYL VTVALVCFAF TTILGWNYYG ERCWSYLTGG RYAGLYRLVF LLLIAGGAFI KLDLIWLLAD IVNGLMAIPN LIALIGLRSV ILAESQRYFG MLAMPGGNAA LPSRAKEAED GLVS
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