Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2594 |
Symbol | lipB |
ID | 4604841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3101908 |
End bp | 3102558 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781995 |
Product | lipoate-protein ligase B |
Protein accession | YP_928466 |
Protein GI | 119775726 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0321] Lipoate-protein ligase B |
TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00491142 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCAAGCCA AGACTCTGCA TATCAGACAT CTGGGTAATC AGGATTATGA AACTGTCTGG CACGCCATGC AGCATTACAC CGATAACCGC GATGAAAACA GCCCGGACGA ACTCTGGTTG GTTGAACATC CTCCGGTATT TACCCAGGGG CAAGCCGGTA AAGCCGAGCA CATCCTCAAT CCCGGCGACA TCCCTGTTAT CCAGGTAGAC CGCGGTGGTC AGGTGACGTA TCACGGCCCG GGTCAGTTGG TTGCATACCC CCTGCTGGAC ATCAAACGCC TTAAAATCGG TGTTCGTCAG CTGGTTACCC ATATAGAGCA GAGCATAGTC GACATGCTGA AGCCCTACGG CGTACAAGCC TACGCTAAAG CCGATGCCCC CGGAGTCTAT GTTGACGAGC GTAAAGTCGC CTCCCTTGGC CTGCGAATCC GCCGTGGTTG TTCTTTCCAC GGTCTGGCAC TGAACGTCGA CATGGATATT TCCCCCTTCC AGCGCATCAA CCCCTGTGGC TATGCCGGCC TGGAAATGGT TCAGTGCAAA GCACTGGGCG GCCCCAATAC CGTAAACGAA GCAGGTGAAA AACTCACCCT CACCTTTAGC CAGCTTCTTG GCTATGAGCA TCTGGTCCAT CACCAAGGAT TAGCAGAATA A
|
Protein sequence | MQAKTLHIRH LGNQDYETVW HAMQHYTDNR DENSPDELWL VEHPPVFTQG QAGKAEHILN PGDIPVIQVD RGGQVTYHGP GQLVAYPLLD IKRLKIGVRQ LVTHIEQSIV DMLKPYGVQA YAKADAPGVY VDERKVASLG LRIRRGCSFH GLALNVDMDI SPFQRINPCG YAGLEMVQCK ALGGPNTVNE AGEKLTLTFS QLLGYEHLVH HQGLAE
|
| |