| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2579 |
|---|
| Symbol | lnt |
|---|
| ID | 4604826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3086040 |
|---|
| End bp | 3087575 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781980 |
|---|
| Product | apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_928451 |
|---|
| Protein GI | 119775711 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0815] Apolipoprotein N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.170018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACTTGA ATGCAATCGC CGGCCGCCGC TGGCCCCGAC TCCTGCTGGC TTTTCTTGCC
GGTGCCTCCA CCTCACTCGC TTTTGCTCCC TATTCGCTCT GGCCCGTTTA TCCAGTTGCA
ATAGCCCTGT CCCTGTGTCT GGCTCAGGGG CTGTCCCCCA GGGCTGCATT TGGCCATTGG
TTCAGTTTTG GCTTTGGCAG CTTTGCTTTT GGAATAAGTT GGGTACACGT CAGCATTGAC
CGATTTGGCG GTCTGCCGCT GGTTGTTTCG CTGTCATTGA TGGCATTGCT GGCACTCTAT
CTTGCACTCT ATCCGGCGCT GGCGGGCATG CTTTACGCCC GATTAAAGAC GGCCCATGTC
CTGCCCAATC TGTTACTGCT GTTTCCGGCG TTGTGGATAT TGACCGAGTG GGCACGGGGA
TGGGTGCTGA CAGGCTTCCC CTGGCTTTGG GCAGGATACA GTCAGACCGA TGGTCCCCTG
TTGCCACTGG CGGCTTTAAT CGGTGTGCAG GGAATAGGCA TGCTCATTCT GGTCTGCGCC
GGCGCCTTGG CGCTGCTCAG TCAAAAACGC TGGTTACCGT TAACGCTGCT GTTGCCGCTG
CTTGCCTTAC TGGTGTTCAC GGCTAACCAG TTTCCTCAGG TACAGCGCAG CGGCGAAACC
GTTAAGGTGT TGCTGGTGCA GGGCAATATC CCCCAGAGCA TGAAATGGGA ACCCGAGCAG
CTTTGGCCTA CCATGCTCAA GTATATGGAC TTGAGTCGCC CACATGCAGA TGCCGACATT
ATTCTGTGGC CCGAGGCCGC TATCCCGGCC CCCGAAGCCA TGGTGGCGGA TTTTCTGGAC
AACGCCAACC GGGTTGCCAA CCTCAATAAC AATGCCATTA TCACCGGCAT CATCAGTCAT
CAGGATAATC ACTGGTACAA CTCACTCATC GTGCTGGGCA ATCATCACGA AAAGGTGCAG
CAGCAACCTG ACTATGAAGC CAATGGTACC AACCAATTCC GTAAGCACCA TTTGCTGCCC
ATCGGCGAAT TTGTGCCTTT TGAGGCCCTG TTGAGGCCCC TGGCGCCTTT CTTCAACCTG
CCCATGTCGT CGTTCAGCCG TGGTGATTAT CAGCAGCCTA ATCTGACTGC AGCAGGTTTT
CAGCTGGCAC CGGCTATTTG CTATGAAATC GCCTTTCCTG AGCAATTGCG TAAAAACGTG
ACTGCACAAA CCGATCTGCT GCTGACAGTA TCCAACGACG CCTGGTTTGG TGAGTCCAAC
GGCCCGCTGC AACACATGGA GATAGCCCGC ATGCGCTCTG CAGAGCTGGG CCGCCCCTTA
CTTCGCGCCA CCAATAATGG CGTAACGGCC GTGGTGGATG AATTTGGCCA CATCACTGCT
GCTGTGCCGC AGTTTGAAAC CCAGGTGCTG AAAACCGACG TTGCCCTGAC CCGGGGCGTG
ACCCTGTTTG CCCGCACCGG GCACCTGCCT CTTTATCTGC TCTGTCTCTT CATAGTGCTG
GCTGCATGGG GTTACAGTCG CAAACTTCCT CGCTGA
|
|---|
| Protein sequence | MDLNAIAGRR WPRLLLAFLA GASTSLAFAP YSLWPVYPVA IALSLCLAQG LSPRAAFGHW
FSFGFGSFAF GISWVHVSID RFGGLPLVVS LSLMALLALY LALYPALAGM LYARLKTAHV
LPNLLLLFPA LWILTEWARG WVLTGFPWLW AGYSQTDGPL LPLAALIGVQ GIGMLILVCA
GALALLSQKR WLPLTLLLPL LALLVFTANQ FPQVQRSGET VKVLLVQGNI PQSMKWEPEQ
LWPTMLKYMD LSRPHADADI ILWPEAAIPA PEAMVADFLD NANRVANLNN NAIITGIISH
QDNHWYNSLI VLGNHHEKVQ QQPDYEANGT NQFRKHHLLP IGEFVPFEAL LRPLAPFFNL
PMSSFSRGDY QQPNLTAAGF QLAPAICYEI AFPEQLRKNV TAQTDLLLTV SNDAWFGESN
GPLQHMEIAR MRSAELGRPL LRATNNGVTA VVDEFGHITA AVPQFETQVL KTDVALTRGV
TLFARTGHLP LYLLCLFIVL AAWGYSRKLP R
|
|---|
| |