Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2561 |
Symbol | |
ID | 4604808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3067601 |
End bp | 3068449 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781956 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | YP_928433 |
Protein GI | 119775693 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.18773 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATCA AGACAATCCA ACTTGGCGAC ATCGCCATTG CCAATGACAA GCCCTTTGTA CTCTTTGGCG GCATGAACGT GCTTGAATCG CGGGATCTGG CCATGAGTAT TGCCGAGAAA TACCTGGAAG TGACCCAAAA GCTTGGGATC CCCTATGTAT TCAAGGCCTC TTTCGACAAG GCCAACCGCT CGTCTATCAA CTCTTACCGT GGTCCCGGGA TGGAAGAAGG CCTGAAGATA TTTCAGGAAA TCAAAGACAC CTTCAATGTG CCGCTGATCA CCGATGTGCA CGAGCCTCAT CAGTGTGCCC CCGTGGCAGA AGTGGTCGAC ATCATTCAGC TGCCAGCCTT TTTGGCACGC CAGACCGATC TGGTGATTGC CATGGCCAGA ACCGGCGCCA TCATCAACGT GAAAAAGCCA CAGTTTCTGG CTCCCCACGA GATGCGCCAC ATAGTGAAGA AATTCAACGA GGCCGGTAAC GACGAGATTA TCCTGTGCGA GCGCGGCAGC TGCTTTGGTT ACAACAACCT GGTGGTGGAC ATGCTGGGCA TGGATGAGAT GAAACAGAGC GGTTATCCGG TAATTTTCGA TGCCACCCAT GCACTGCAGC GTCCGGGCGG CCGTGAAGAT TCTGCCGGTG GTCGCCGCGC CCAGGCAACT GAGCTTGCCC GCAGTGGTAT GGCGCTGGGT CTGGCAGGTC TCTTTATCGA AGCACATCCG GATCCCGACA ATGCCAAGTG CGACGGCCCC TGTGCTCTGC CACTGCATCA GCTGGAAGCT TACCTCAGTC AGATGAAAGC GGTAGATGAC CTGGTGAAAT CTTTTCCTGC ACTGGATACC AGCAAGTAA
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Protein sequence | MSIKTIQLGD IAIANDKPFV LFGGMNVLES RDLAMSIAEK YLEVTQKLGI PYVFKASFDK ANRSSINSYR GPGMEEGLKI FQEIKDTFNV PLITDVHEPH QCAPVAEVVD IIQLPAFLAR QTDLVIAMAR TGAIINVKKP QFLAPHEMRH IVKKFNEAGN DEIILCERGS CFGYNNLVVD MLGMDEMKQS GYPVIFDATH ALQRPGGRED SAGGRRAQAT ELARSGMALG LAGLFIEAHP DPDNAKCDGP CALPLHQLEA YLSQMKAVDD LVKSFPALDT SK
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