Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2550 |
Symbol | |
ID | 4604797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3058695 |
End bp | 3059558 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781945 |
Product | sterol desaturase family protein |
Protein accession | YP_928422 |
Protein GI | 119775682 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG3000] Sterol desaturase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.534316 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTCG ACAAGCTAAT TGCCCATCCG GAGCTGCTGC TGATAGTGTT GGCGCCGATT TTTTTTCTGT GCATGGCGCT GGAGTTTGTG GTCGCCAATG TGCGTAAGCG ACTGCCGGAA AATGCCAGAT ACAGTAAAGC AGAGCTCCTG TGTAACCTCA GTCTGGCGGG AATGCACCAG GCTGCCGATC TGCTGAGCGG ATTTCTGATT GCCAAACTGT ACCTGTATTT TTTTGGTTGG CGGCTGTTCG ATATTGAAAT GAATGGGCTT AATTTTGTGT TGCTGCTGCT GGCACAGGAT TTTTGCTATT ACTGGTTCCA TCGTTGCAGC CACCGATGCC GCTGGATGTG GGCCGCTCAT GTGGCTCATC ACAGCTCAGA AAACATGAAC TTTTCCACCG CTTTCAGACA AAGCCTGATG TACCCGCTGG CGGGAATGTG GATATTCTGG TTGCCTCTGG TTGTGATTGG TTTCGACCCT GCCTGGGTCG TGTTTGCGGT GCTGGCAAGC CTTGGGTTTC AGTTTTTTGT ACATACCCAG CTGGTGGATA AACTTGGCCC GCTGGAATGG GTATTCAATA CTCCCAGCCA CCACAGGGTG CATCACGGCT CAAATCCCCA ATACATAGAT AAAAACTACG CCGGCGTGCT CATCATTTGG GATCGGCTGT TTGGCACCTT CGTCAAAGAA GAGGAAACCG TGCGCTACGG CATCACCAAG CCGATTAACA GCATGAACCC GCTCACGGTC ACCTTCAGTG AATGGCGCGA TATGTTCACA GATGCCACGG CGCCGGGGCT GAGTCTCGCC GAGCGCTGGC GTCAGCTTTT TGCACCACCC TCCAGCGCCA ACGATAAGGA TTGA
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Protein sequence | MNLDKLIAHP ELLLIVLAPI FFLCMALEFV VANVRKRLPE NARYSKAELL CNLSLAGMHQ AADLLSGFLI AKLYLYFFGW RLFDIEMNGL NFVLLLLAQD FCYYWFHRCS HRCRWMWAAH VAHHSSENMN FSTAFRQSLM YPLAGMWIFW LPLVVIGFDP AWVVFAVLAS LGFQFFVHTQ LVDKLGPLEW VFNTPSHHRV HHGSNPQYID KNYAGVLIIW DRLFGTFVKE EETVRYGITK PINSMNPLTV TFSEWRDMFT DATAPGLSLA ERWRQLFAPP SSANDKD
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