| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2503 |
|---|
| Symbol | carB |
|---|
| ID | 4604750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 3005923 |
|---|
| End bp | 3009153 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639781898 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_928375 |
|---|
| Protein GI | 119775635 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAC GTACCGACAT AAAAAGTATT CTGATCCTGG GTGCTGGCCC CATCGTTATC
GGCCAGGCCT GTGAATTCGA CTACTCTGGC GCCCAGGCCT GTAAGGCCCT GCGCGAAGAA
GGCTACCGTG TCATCCTGGT GAACTCCAAC CCGGCCACCA TCATGACTGA CCCAGAAATG
GCCGATGCCA CATACATCGA GCCTATCCAC TGGGAAGTGG TGCGCAACAT CATCGCTAAA
GAGCGTCCGG ATGCCATTCT GCCCACCATG GGTGGTCAGA CCGCACTGAA CTGTGCTCTG
GAGCTGGAAG CCAAAGGCGT TCTGAAGGAA TTCAACGTTG AGATGATTGG CGCCACCGCC
GATGCCATCG ACAAGGCTGA AGACCGCGCC CGTTTCGACA AGGCCATGAA GAAGATTGGT
CTGGAATGTC CACGCGCCGG TATCGCCCAC AGCATGGAAG AGGCCTACGC GGTACTCGAC
CAGGTTGGCT TCCCCTGTAT TATCCGTCCC TCCTTCACCA TGGGTGGCTC GGGCGGCGGT
ATCGCTTACA ACAAAGAAGA GTTCGAAGAA ATCTGTTCTC AGGGTCTCGA ACTGTCGCCT
ACCAACGAGC TGCTGATTGA CGAGTCGCTC ATCGGTTGGA AAGAGTACGA GATGGAAGTG
GTCCGTGACC GCAACGACAA CTGCATCATC GTCTGTTCCA TCGAAAACTT TGACGCCATG
GGCGTGCATA CAGGTGACTC CATCACTGTG GCTCCTGCCC AGACCCTCAC CGACAAGGAA
TACCAAATCA TGCGTAACGC CTCCATGGCG GTACTGCGTG AAATCGGTGT GGAAACCGGC
GGTTCCAACG TACAGTTTGG TATCAGCCCG ACAACCGGCC GTATGGTGGT TATCGAGATG
AACCCCCGTG TATCCCGCTC TTCAGCGCTG GCCTCTAAAG CAACCGGTTT CCCGATTGCC
AAGGTTGCTG CCAAGCTGGC CGTGGGCTTC ACCCTCGATG AGCTGATGAA CGACATCACC
GGCGGTCGCA CCCCTGCGTC TTTCGAGCCA TCCATCGACT ACGTGGTGAC CAAGGTGCCA
CGCTTTAATT TCGAAAAATT TGCCGGTGCC AACGACCGTC TGACCACTCA GATGAAGTCT
GTGGGCGAAG TCATGGCCAT CGGCCGTACC TTCCAGGAGT CGGTGCAAAA GGCCCTGCGT
GGCCTCGAAG TGAGCCGCAA CGGTTTTGAC CCCATCGTAG ATCTGAGCGA TGCCGACGCG
CTGCAAAAAA TCCGTCACGA GCTGAAAGAG CCGGGCGCAG ACCGTATCTG GTACATAGGC
GATGCTTTCC GTGCCGGCCT GTCTGTGGAA GATATCTTCG CCCTGACCAA CATCGACCGC
TGGTTCCTGG TGCAGATTGA AGAAATCATC CAGCTTGAAG CCAAGGTGAA AGAGCTGGGC
GTGACCGGTA TCGATGAAGA TTTCCTGCGC AAACTCAAGC GTAAGGGTTT CTCCGATGCG
CGTATGAGTG CACTGCTTGG CATCAGCGAA GGTGAAATCC GCAAGCTGCG TGAACGCTTC
AACGTGTTCC CGGTGTACAA GCGCGTGGAT ACCTGCGCCG CCGAATTTGC CACCGACACC
GCTTACATGT ACTCCACCTA CGAGGAAGAG TGCGAAGCCA ATCCGTCAGA CAAAGACAAG
ATCATGGTAC TGGGCGGTGG TCCAAACCGT ATCGGTCAGG GTATCGAGTT CGACTACTGC
TGTGTGCACG CCGCGCTGGC GCTGCGTGAA GACGGTTATG AAACCATCAT GGTGAACTGC
AACCCTGAAA CCGTTTCTAC CGACTACGAC ACCTCAGACC GTCTGTACTT CGAACCAGTG
ACTCTGGAAG ACGTACTGGA AATCGTGCGC ATCGAGAAGC CAAAGGGCGT TATCGTGCAT
TACGGTGGTC AGACGCCACT GAAACTGGCC CGCGCCCTGG AAGCCGCCGG TGTACCTATT
ATCGGTACCA GCCCGGATGC CATTGACCGC GCCGAAGACC GTGAGCGTTT CCAGCAGGCT
ATCAAACGCC TGAACATGAA GCAGCCGGAA AACGATACCG TGACCACAGT GGAAGGCGCT
GTGATTGCCG CCGAGCGTAT CGGTTACCCA CTGGTGGTTC GTCCATCCTA CGTACTGGGT
GGCCGCGCCA TGGAAATCGT GTATGACGAG CAGGATCTGC GCCGTTACTT CAACGAAGCG
GTAAGCGTAT CCAACGCTTC GCCAGTACTG CTGGACCGCT TCCTGGATGA TGCCACCGAG
GTGGATATCG ATGCCGTGTG TGACGGTGAA ACCGTGGTTA TCGGCGCCAT CATGGAGCAC
ATCGAACAAG CCGGTGTTCA CTCTGGTGAC TCCGCCTGTT CTCTGCCTCC ATACACCCTG
TCCAAGGCGA TTCAGGACCA GATGCGCGAG CAGGTCAGCA AGCTGGCGTT TGAGCTTGGC
GTAGTGGGCC TGATGAACGT GCAGTTTGCG GTGAAGGATA ACGAAATCTA CATGATTGAA
GTTAACCCAC GCGCTGCCCG TACCGTGCCT TTCGTGTCCA AGGCAACCGG TGTGCCTCTG
GCCAAGATTG CCGCCCGTGT GATGGCAGGT CAGAGCCTGA AGCAGCAGAA CTTTACCAAG
GAAGTGATCC CTCCTTTCTA CTCTGTGAAA GAAGTGGTGC TGCCGTTCAA CAAGTTCCCC
GGCGTTGACC CGCTGCTCGG ACCTGAAATG CGCTCTACCG GTGAGGTAAT GGGGGTGGGC
GACACCTTCG CTGAAGCCTA TGCCAAGTCT GAACTGGGCT CTATCAAGGA CGTGCCACGT
TCTGGCCGCG CCCTGTTGTC TGTGCGTAAC AGCGACAAGA ACAAGGTGGC TGACCTTGCC
GCCAAGCTCC TGGAACTGGG TTACGAGCTG GATGCTACCC ACGGCACCGC GGTTATCCTC
GGTGAAGCCG GTATCAACCC ACGCCTGGTG AACAAGGTGC ATGAAGGCCG TCCACACATT
CTTGACCGCA TCAAGAACGG TGAGTATGCC TACATAGTGA ACACCACCGA AGGCCGTCAG
GCCATCGAAG ATTCACGCCA GTTGCGCCGC GCCGCGCTGC GTTACAAGGT GAACTACACC
ACCACATTGA ACGCCGCCTT CGCCAACTGT ATGGCTCACA ACGCCGATGA CCGTAACAAG
GTTGCTTCGG TGCAAGAGCT GCACGAGCGC GTGAAGCAGT CTCAGGGCTG A
|
|---|
| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELEAKGVLKE FNVEMIGATA
DAIDKAEDRA RFDKAMKKIG LECPRAGIAH SMEEAYAVLD QVGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLELSP TNELLIDESL IGWKEYEMEV VRDRNDNCII VCSIENFDAM
GVHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFGISP TTGRMVVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGF TLDELMNDIT GGRTPASFEP SIDYVVTKVP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESVQKALR GLEVSRNGFD PIVDLSDADA
LQKIRHELKE PGADRIWYIG DAFRAGLSVE DIFALTNIDR WFLVQIEEII QLEAKVKELG
VTGIDEDFLR KLKRKGFSDA RMSALLGISE GEIRKLRERF NVFPVYKRVD TCAAEFATDT
AYMYSTYEEE CEANPSDKDK IMVLGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVH YGGQTPLKLA RALEAAGVPI
IGTSPDAIDR AEDRERFQQA IKRLNMKQPE NDTVTTVEGA VIAAERIGYP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDRFLDDATE VDIDAVCDGE TVVIGAIMEH
IEQAGVHSGD SACSLPPYTL SKAIQDQMRE QVSKLAFELG VVGLMNVQFA VKDNEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKQQNFTK EVIPPFYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG DTFAEAYAKS ELGSIKDVPR SGRALLSVRN SDKNKVADLA
AKLLELGYEL DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYA YIVNTTEGRQ
AIEDSRQLRR AALRYKVNYT TTLNAAFANC MAHNADDRNK VASVQELHER VKQSQG
|
|---|
| |