Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2351 |
Symbol | |
ID | 4604601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2824025 |
End bp | 2825533 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639781749 |
Product | putative transglycosylase |
Protein accession | YP_928226 |
Protein GI | 119775486 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0115829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.881072 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCGGG TAGAATTGCG CCGTTTTCGA CCAGTCTTGA CTGAATTTCC TGGGGTTAAT TTATTGATTA GATTAAGACG AGTCCTTTTT CTGCTGACGA GTGTACTGGT GCTGACAGCC TGTCAGCCAC CAGGCCTTGT TGTGGACGCA CCACAACCCA AAGCAGAAGC CGAGACACTT CGCGTGGGCA CCCTGTACGG TGCACAGATC TACATGAGTT CGGGCCAGGG CCTGTCCGGC TTTGATTATG AGCTGGCCCA GAAGTTTGCC GACTATTTGG GTAAACCTTT GGAAATGCAG CCATACAGCA ACAGAAGCGA GCTTTATGAT GCGTTGGCCA AAGGCGAAAT TGACCTGATT GCCGCCGGTA TCACCGAAAG CCCCAACCGC CGCAATCGTT TTCGTATGGG ACCGCCCCTT TACCGGGTGG ACCAGGTAGT GGTGTACCGT CAGGGTAACA GGGCGCCGGA ATCCATAGAA CAGCTCAGCG GCAATCTCAC TGTGGTGGCC GATTCGGCGT TTGTGGAAAC CCTCACGAGG CTGCAGCAAA CCCATACAAA TCTGAGCTGG GAGCAAACCA GCGAAAAAGA CAACGACGAG CTCATTGCCA TGATTGCCAG TGGCGAGCTC AATTACACCC TGGCGCAATC AACCAGTCTG GACATTAACC GCCGCTATAT GCCGGAGCTC AGAAGCGGCC TGGTGCTGGA GGAAAAGGTA CCTGTGGTCT GGCTGTTGCC TGCTCAAAAT AGCGATGCCC TGATGAGCAA GCTGCTGGCC TTCTGGCACC AGGAAAAACG TGCCGGCACC CTGGCCCATC TCAATGAAAA ATACTTCGGC CACGTGAAGC GTTTCGATTA TGTCGACACC CGCGCTTTTA TCCGCGCCAT CGATGCCAAA CTGCCCCGTT ACCGGCCTTT GTTTGAAGAA TATGCCGGTG ATTTGGACTG GCGAAAGCTG GCCGCAGCCA GTTATCAGGA GTCACACTGG AACCCCAATG CCCGCTCTCC TACCGGGGTA CGTGGCATGA TGATGCTGAC CAATGCCACC GCCAGCCAGT TGGGGGTGAC CAATCGCCTC GACCCGCGCC AAAGCATCCG TGGTGGCGCC GATTATCTGC GGGACTTGAT AAATCGCCTG CCGGAATCCA TCCCCGAAAA TCAGCGGATG TGGTTTGCGC TGGCCGCCTA CAACATAGGT TTGGGTCATT TGGAGGATGC ACGCAGGCTG GCTGAAGCGC AGGGGCTAAA TCCCAGCGCC TGGCGGGATG TGAAACAGGT ATTGCCATTG CTGCAAAAAA GGAAGTTTTA CAGCCAAACC CGTTATGGTT ATGCCAGAGG CGGTGAAGCT GTGCACTATG TGGACTCCAT CCGCCGCTAT TACGACACTC TGGTTTGGGT CGACAATCAA AAACCCAAAG ATGAGCCACA GCTTCCGGAT GAAATTCAGG TAGAAGAAAC CGCCGCCAGC AGTGGCGCAG AGCCACCAAC CGCGGCTCCC CGCGAATAA
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Protein sequence | MHRVELRRFR PVLTEFPGVN LLIRLRRVLF LLTSVLVLTA CQPPGLVVDA PQPKAEAETL RVGTLYGAQI YMSSGQGLSG FDYELAQKFA DYLGKPLEMQ PYSNRSELYD ALAKGEIDLI AAGITESPNR RNRFRMGPPL YRVDQVVVYR QGNRAPESIE QLSGNLTVVA DSAFVETLTR LQQTHTNLSW EQTSEKDNDE LIAMIASGEL NYTLAQSTSL DINRRYMPEL RSGLVLEEKV PVVWLLPAQN SDALMSKLLA FWHQEKRAGT LAHLNEKYFG HVKRFDYVDT RAFIRAIDAK LPRYRPLFEE YAGDLDWRKL AAASYQESHW NPNARSPTGV RGMMMLTNAT ASQLGVTNRL DPRQSIRGGA DYLRDLINRL PESIPENQRM WFALAAYNIG LGHLEDARRL AEAQGLNPSA WRDVKQVLPL LQKRKFYSQT RYGYARGGEA VHYVDSIRRY YDTLVWVDNQ KPKDEPQLPD EIQVEETAAS SGAEPPTAAP RE
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