| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2285 |
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| Symbol | fliR |
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| ID | 4604535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2752162 |
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| End bp | 2752950 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639781682 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_928160 |
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| Protein GI | 119775420 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.216836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.948189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGTCC TCCTTGATAC TCTGATGGAG ACTATCAAGG CCTATACCTG GCCCTTGTTT
CGCATTTCCG CGATGTTTAT GGTGATGCCG GTGTTTGGCG CCAATACAAC GCCGGTGCGG
GTGAGGCTGC TGTTATCCGT TGCCGTGACC TTTGCCGTGA GCCCCATGTT ACCGCCCATG
CCCCAGGGCG AGCTGTTTGC CTTAAGCTCA GTCTTTATCA GCGCCCAACA AGTCCTGATT
GGTGTTGCCA TGGGACTGGT TGCATTGATG ATGTTGCAGA TTTTCGTACT CACCGGTCAA
ATCATAGGGA TGCAGACGAG TCTCGGATTC TCATTCATGG TGGACCCCGG CTCCGGGCAG
CAAACACCTG TGCTGGGTAA TTTCTTCCTC CTGCTTGCCA CCCTGATTTT CCTTGCCGTG
GACGGCCATC TCACCATGAT CCGCATGTTG GTGATGAGCT TTGATACCCT GCCTGTGTCT
ATGACTGGCA TCACCCTGGC TAACTATCAC AGCCTGGCGC TGTGGGGCAG CTACATGTTC
GGTGCGGCGC TCACCATGTC GCTGTCGGCA ATTGTTGCGC TGCTGCTGAT CAACCTGTCG
TTTGGGGTCA TGACCCGGGC AGCTCCGCAG CTAAATATCT TTGCCATCGG TTTCCCGGTG
GTGATGATTA GTGGCCTCTT TATCCTCTGG TTGACCCTGG CACCTGTGAT GTCCCACTTC
GGTGAGATTT GGGAAGCGGC CCAGGTGTTG TTGTGTGACA TTACCCATAT TCAATGCCGG
GTGAACTGA
|
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| Protein sequence | MDVLLDTLME TIKAYTWPLF RISAMFMVMP VFGANTTPVR VRLLLSVAVT FAVSPMLPPM
PQGELFALSS VFISAQQVLI GVAMGLVALM MLQIFVLTGQ IIGMQTSLGF SFMVDPGSGQ
QTPVLGNFFL LLATLIFLAV DGHLTMIRML VMSFDTLPVS MTGITLANYH SLALWGSYMF
GAALTMSLSA IVALLLINLS FGVMTRAAPQ LNIFAIGFPV VMISGLFILW LTLAPVMSHF
GEIWEAAQVL LCDITHIQCR VN
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