| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2268 |
|---|
| Symbol | |
|---|
| ID | 4604518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2734603 |
|---|
| End bp | 2735433 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639781665 |
|---|
| Product | vacJ lipoprotein, putative |
|---|
| Protein accession | YP_928143 |
|---|
| Protein GI | 119775403 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2853] Surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.232246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0547217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTATT ATCGTCAGCC ACGGCGCTTT CTAAAGCCGA TTTCGGCCTT TTGTATAGAG
AGAGTTATGA AGTTGAAATG GATTGCCTTG CCATTCATGT TGTTGGCAGG CTTGGCTCAG
GCAGAGCAGG ACAATTCGGT CTCAGAGAAG CAGGTAGACG TTGTTTACAA CGATCCCCGT
GACCCTTTCG AAGGGTTTAA CCGCGCCATG TGGGATCTTA ACTACAACGT GCTTGACCGT
TATATCTATC GTCCCGTCGC CCACACCTAC AAAGATTATG TGCCCAGTCC GGTAAAGTCG
GGACTGCATA ATTTTGTCCG CAATCTTGAA GAGCCCAATG CCTTGGTGAA CAACACACTT
CAGGGGAAGT TTGGTTGGGC GGCCAACGCC GGCGGACGTT TTGTGGTGAA CTCCACCATA
GGTCTGCTCG GGGTCGTTGA TGTGGCCGAC ATGATGGGCA TGCATCGGAA GCAGGATGAT
TTTAACGAGG TTTTGGGTTA CTACGGTGTG CCCAATGGTC CTTACTTTAT GGCGCCATTT
TTTGGCCCTT ATGTTACCCG TGAACTCGCG AGTGATTGGG TCGATGGACT ATACTTTCCC
TTGTCAGAGC TGACGATGTG GCAGTCTGTG GTCAAATGGG GCATCAAAAG CCTGCATGTG
CGGACAGAAG CCATCGATCA GGAACGTCTG CTCGACAATG CTCTGGATCC CTACACCTTT
GTAAAAGATG CATATTTACA GCACATGGAC TACAAGGTGT ATGATGGCAA TGTACCATCA
AATCAAGAAG ATGATGAACT TCTTGATGAA TATATGCAGG AGCTAGAATA G
|
|---|
| Protein sequence | MLYYRQPRRF LKPISAFCIE RVMKLKWIAL PFMLLAGLAQ AEQDNSVSEK QVDVVYNDPR
DPFEGFNRAM WDLNYNVLDR YIYRPVAHTY KDYVPSPVKS GLHNFVRNLE EPNALVNNTL
QGKFGWAANA GGRFVVNSTI GLLGVVDVAD MMGMHRKQDD FNEVLGYYGV PNGPYFMAPF
FGPYVTRELA SDWVDGLYFP LSELTMWQSV VKWGIKSLHV RTEAIDQERL LDNALDPYTF
VKDAYLQHMD YKVYDGNVPS NQEDDELLDE YMQELE
|
|---|
| |