| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2244 |
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| Symbol | |
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| ID | 4604494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2708203 |
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| End bp | 2710137 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639781641 |
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| Product | polysaccharide biosynthesis protein |
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| Protein accession | YP_928119 |
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| Protein GI | 119775379 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.36548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0653141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTTT TCCAATTTTT ATTTTCGCTT AAGCGGCCAC ACAAACGTAT GGTTAGCGTG
GCGGTTGACT CAGTGTTTTT GGTCTTGTCC TTCTGGTTTG CGTTGTTCGT GAGGCTGGAC
TCTGTTGAGG TAGTGCTTAA CAGTCAATTT TGGCTGCTTA TTGCACTGGT TTGCCCAGTG
AGTATTGCGG CGTTTGTCAA GCTGGGTCTC TATCGTGCAG TGCTCAGGTA TCTCGGTACT
CAGGCAATGA CAGCCATAGT GCTTGGTGTG ATTGTTAGCA CGCTTGCCAT GGTGAGTTTT
GCTTACTTTT TGTCGGTAGA CTTGCCGCGA ACGGTTCCAT TTATCTTTGC TTCCTTTGCG
TTGGTATTCG TAGGCGGGGC CAGAGCGCTG ATGCGGTCAC TGGTGGGGAA TGGCATTAAC
CGTCGAGGTG AGCCTGTCAT CATTTATGGT GCTGGTGTAA GTGGAAGGCA AACCGCGTTG
GCGCTTGCAC AAAGTCATGA ATACCATCCT TTCGCGTTTG TCGATGACGA TGAAACCTTG
CATGGCACTG TGATCCAGGG GCTACATGTG CATTCCCCTT CAATCATAAA AAAACTGATT
AAGCAGCAAA AAGCGTCAAG AGTGCTTTTG GCCATGCCAA GTGCGAGCCG GGCACGTCGT
CAACAAATTT TGCAGACTCT TGAACCTTTA TCGGTAAAGG TAATGACCTT GCCCGCCATG
GCTGATTTAG TCAGTGGTAA TAAGCTGTTC AGTGACGTAA AAGAAGTAGA GATTGAAGAC
TTACTTGGCA GGGATGCGGT AGCGCCAAGA AAGGATTTAA TGGCGGCTAA CATTACCGGT
AAAGTCGTGA TGGTGACAGG TGCGGGTGGT TCCATCGGCT CTGAACTGTG CAGGCAGATA
TTACGACTGG CGCCACGCAA GCTGGTGTTG TTTGAGTTGT CCGAGTTTGG TCTTTACTCC
ATCGAACGGG AACTTCAGGC GATTAGAGCA GAGCTCGGTC TCGACGTTGA ACTATTCCCT
ATGATGGGCT CAGTACAACG CCAAAATCGT GTTCAGGCCG TCATGGAAGC GTTTAAAGTA
CAAACTGTTT ATCATGCAGC GGCTTATAAG CATGTTCCCC TGGTTGAGCA CAATGTGGTA
GAAGGGGTTC GCAATAATGT ATTTGGCACC CTTTATACGG CTCAAGCGGC AATAGCGACC
GGTGTTGAGA CTTTTGTTCT CATTTCAACG GATAAAGCGG TGCGCCCCAC GAATGTGATG
GGTACCACCA AACGAATGGC CGAGCTGGTG CTTCAAGCGC TTTCGAAACT GAATTCCGGT
ACGCGTTTTT GTATGGTGCG TTTTGGTAAC GTACTTGGCT CGAGTGGTTC TGTGGTGCCT
TTGTTCCGTA AACAAATTGC TAACGGTGGC CCCGTTACGG TCACTCATCC TGAAATTACC
CGATTTTTTA TGACAATTCC TGAAGCATCA CAGCTGGTTA TTCAGGCCGG GGCTATGGGT
ATAGGTGGCG ACGTTTTTGT ACTCGATATG GGGCAATCCG TTAAAATTGT CGACCTTGCC
CGTAAGATGA TTCGGCTGTC AGGCTTCGAA GTGAAAGATG AGCATAATCC AGATGGGGAT
ATCGAAATCC AGTTTAGTGG TCTTCGTCCC GGGGAGAAGC TGTACGAAGA ATTGCTTATC
GGCGATAACG TTGAAGGCAC TGGGCACGAG CGGATTATGA CAGCCCATGA AGTGTTCTTA
ACGTGGGAAG AGCTCAAGCC AGTACTCGAC AAACTGGATA TGGCTTGTCA CGCGTTTGAT
CATGAATCCA TTCGCGAGCT GATGCTGAAG GCGCCCACAG GTTTTAATCC AACAGATGGG
ATCTGTGATC TTGTATGGTT AAACCGGCGC CATGTCGAAG ACAGATCAAA CGTTGTGGCG
TTGAAAGGCC AGTAA
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| Protein sequence | MDFFQFLFSL KRPHKRMVSV AVDSVFLVLS FWFALFVRLD SVEVVLNSQF WLLIALVCPV
SIAAFVKLGL YRAVLRYLGT QAMTAIVLGV IVSTLAMVSF AYFLSVDLPR TVPFIFASFA
LVFVGGARAL MRSLVGNGIN RRGEPVIIYG AGVSGRQTAL ALAQSHEYHP FAFVDDDETL
HGTVIQGLHV HSPSIIKKLI KQQKASRVLL AMPSASRARR QQILQTLEPL SVKVMTLPAM
ADLVSGNKLF SDVKEVEIED LLGRDAVAPR KDLMAANITG KVVMVTGAGG SIGSELCRQI
LRLAPRKLVL FELSEFGLYS IERELQAIRA ELGLDVELFP MMGSVQRQNR VQAVMEAFKV
QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT LYTAQAAIAT GVETFVLIST DKAVRPTNVM
GTTKRMAELV LQALSKLNSG TRFCMVRFGN VLGSSGSVVP LFRKQIANGG PVTVTHPEIT
RFFMTIPEAS QLVIQAGAMG IGGDVFVLDM GQSVKIVDLA RKMIRLSGFE VKDEHNPDGD
IEIQFSGLRP GEKLYEELLI GDNVEGTGHE RIMTAHEVFL TWEELKPVLD KLDMACHAFD
HESIRELMLK APTGFNPTDG ICDLVWLNRR HVEDRSNVVA LKGQ
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