Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2209 |
Symbol | |
ID | 4604459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2670054 |
End bp | 2671073 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781606 |
Product | C4-dicarboxylate-binding periplasmic protein |
Protein accession | YP_928084 |
Protein GI | 119775344 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.160504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTAT CAAAACCAGC GACCCTGCAA TCTCTCTTTA CCCTAGGCAA AGCCAGCCTG CTGGCAACCG TGCTGGGATT CAGCTTCGGT GCAGTCGCCG AACCGGTAGA AATCAAGTTC TCCCACGTGG TAGCGGAAAA CACCCCCAAA GGCCAAATGG CGCTCAAGTT TAAAGAGTTG GTGGAAAGCC GTCTTCCCGG TGAATATAAG GTGAGTGTAT TTCCCAACTC ACAGCTCTTT GGTGACAACA ACGAACTGGC GGCACTGCTG CTGAACGATG TACAGCTGGT AGCGCCATCC CTGTCCAAGT TCGAGCGCTA TACCAAAAAA CTGCAGGTAT TCGATCTGCC CTTCCTGTTT GAAGACATGG ATGCGGTGGA CCGCTTCCAA CAGAGTGAAG CTGGCCAGCA ACTGCTGAAC TCTATGAGCC GCAAAGGCCT GGTTGGTTTG GGCTATCTGC ACAATGGGAT GAAGCAGTTT TCGGCCAACA ATGCCCTGTC ACTGCCAGGC GACGCCGCCG GTAAGAAATT CCGCATCATG CCTTCCGATG TGATTGCAGC GCAGTTTGAG GCCGTGGGTG CCATCCCGGT GAAAAAGCCG TTCTCCGAAG TCTTTACCCT GCTGCAGACC CGCGCCATCG ATGGCCAGGA AAACACCTGG TCCAATATCT ATTCCAAGAA GTTTTATGAA GTACAGACTC ACATTACCGA GAGCAATCAC GGCGTACTCG ACTATATGTT GGTCACCTCT GAAACCTTCT GGAAGAGTCT GCCCAAGGAC AAACGCGAAA TCATCAAGCA GTCCATGGAC GAAGCCGTTG CCCTTGGGAA CAAACTGGCT CTGGAAAAAG CCAACGAAGA TCGTCAGCTC ATCCTCGACT CCAAGCGTGT TGAGCTGGTG ACCCTGACCC CCGAGCAGCG CCAGGCCTGG GTTAATGCCA TGCGTCCTGT CTGGTCACAG TTTGAAGACA AGATTGGTAA AGACCTGATT GAAGCCGCCG AGTCTGCCAA CAAGCCGTAA
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Protein sequence | MKVSKPATLQ SLFTLGKASL LATVLGFSFG AVAEPVEIKF SHVVAENTPK GQMALKFKEL VESRLPGEYK VSVFPNSQLF GDNNELAALL LNDVQLVAPS LSKFERYTKK LQVFDLPFLF EDMDAVDRFQ QSEAGQQLLN SMSRKGLVGL GYLHNGMKQF SANNALSLPG DAAGKKFRIM PSDVIAAQFE AVGAIPVKKP FSEVFTLLQT RAIDGQENTW SNIYSKKFYE VQTHITESNH GVLDYMLVTS ETFWKSLPKD KREIIKQSMD EAVALGNKLA LEKANEDRQL ILDSKRVELV TLTPEQRQAW VNAMRPVWSQ FEDKIGKDLI EAAESANKP
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