| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2191 |
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| Symbol | secD |
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| ID | 4604441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2649111 |
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| End bp | 2650961 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781576 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_928066 |
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| Protein GI | 119775326 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.111681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00360319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCTAAATA AATACCCAAT GTGGAAGAAC ATCATGGTGG TGCTGGTCAT CGCCATTGGT
GGCTTCTATG CGCTGCCCAA CCTGTTCGGC GAGGATCATG CCGTACAGGT CGTGGCTACC
CGTGGTGCAG ACGTTACCGC AACTACCCAA TCTGACGTGT CAGCAGCGCT GACCGCCAAG
GGCATTGGCA TCAAGCGATC TGAGCTTGAA AATGGCCAGT TGCTGGTGCG TGTGGCCAAT
GCTGAAGATC AGCTCACAGC CAAAGAAACC ATTGCCGAAT TGCTGGGCGA CAAATACACA
GTAGCCCTTA ACCTGGCACC GGCCACTCCT GAGTGGCTGG AGTCAGTGGG CGGCAGCCCC
ATGAAGCTGG GTCTCGACCT TCGCGGCGGT GTGCACTTCC TGATGGAAGT GGACATGAGC
GAAGCCATCC GCAAGATGGA AGAGGCCAAG ATTGCCGATT TTCGCAGTCA GCTTCGTGAA
GAGCGTATTC GCTATGCCGG TGTGCATCGC ACCGTGCGCG GTATCGAAAT CAAGTTCCGT
GACGCCGAGA CTCTGTCTCA GGCAGAACGA TTCCTGAAGA GCCGTGGCAA TGACATGGTG
TTTTCGGATA TCTCCAGTGG TGACAACGTG GTACTGCTGG CGGTGATGAG CGAGGCCTAC
CTCAAGCAAA TCAAAGAGGA AGCCCTGCTG CAAAACATCA CGACCATCCG TAACCGTGTG
AACGAGCTGG GTGTGGCTGA GCCTGTGGTG CAGCGTCAGG GTGCTGAGCG CATCATCGTG
GAACTTCCCG GCGTACAGGA CACTGCCCGC GCCAAAGAAA TTCTGGGTGC CACAGCCTCC
ATTGAATTCC ATATGGTGGA TGAAAAAGCC GACGTGGCTG CTGCTGCCAA TGGCCGTGTG
CCAGCCGGCA GCGAGCTGTA TCAGCGCCGC GAAGGCGGCC CTGTGGTACT GAAGAAAGAA
GTGATGCTGA CCGGTGACCA TATTACCGGT GCTCAGCCTT CTTTCGACGA ATACAGCCGT
CCACAGGTCG CTATTCAGTT GGATGCCAAG GGTGGGGAAA TCTTCTCCAA CGTTACCAAG
GACAACATCG GCAAGCCGAT GGCGACCCTG TTCATTGAAT ACAAGGACAG CGGTGAGCGT
AACCCCGATG GCAGCGTGAA GATGCGTAAA ATCGAGGAAG TTATCTCGGT TGCCACCATT
CAGGCACGCC TTGGCCGTAA CTTTGTTATC ACCGGTCTGA CCCACAGCGA GTCGCAGAAT
CTGGCGCTCT TGCTGCGTGC CGGTGCACTG ATTGCTCCTG TATCCATCGT GGAAGAACGC
ACCATTGGTC CAAGCCTGGG TGCCGAAAAC ATCGAAAACG GTCTGCAGGC GATGATCTGG
GGTATGGTTG TGGTACTGGC CTTTATGCTG GTGTACTACC GTGCCTTCGG TGTGATTGCC
AACCTGGCGC TGTGTGCCAA CCTCATCATG GTGGTGGGCG TGATGTCCAT GATCCCGGGT
GCGGTGCTGA CCCTGCCGGG TATTGCCGGT ATGGTATTGA CTGTGGGTAT GGCTGTTGAC
GGCAACGTAC TGATTTATGA GCGTATCCGT GAAGAGCTTC GTGCCGGTCG CAGCGTACAG
CAGGCTATCC ACGAAGGTTA TGGCAACGCA CTGTCGACCA TCGCCGACGC CAACATCACC
ACCTTCCTGA CGGCTCTGAT TTTGTTTGCT GTGGGTACAG GTGCGGTAAA AGGCTTTGCC
GTGACCCTGA TGATTGGTAT TGCCACCTCC ATGTTTACTG CCATTGTGGG TACACGAGCT
ATCGTGAACG CCCTCTGGGG TGGTAAGCGT GTGAAGAAAT TGTCGATTTA A
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| Protein sequence | MLNKYPMWKN IMVVLVIAIG GFYALPNLFG EDHAVQVVAT RGADVTATTQ SDVSAALTAK
GIGIKRSELE NGQLLVRVAN AEDQLTAKET IAELLGDKYT VALNLAPATP EWLESVGGSP
MKLGLDLRGG VHFLMEVDMS EAIRKMEEAK IADFRSQLRE ERIRYAGVHR TVRGIEIKFR
DAETLSQAER FLKSRGNDMV FSDISSGDNV VLLAVMSEAY LKQIKEEALL QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDEKA DVAAAANGRV
PAGSELYQRR EGGPVVLKKE VMLTGDHITG AQPSFDEYSR PQVAIQLDAK GGEIFSNVTK
DNIGKPMATL FIEYKDSGER NPDGSVKMRK IEEVISVATI QARLGRNFVI TGLTHSESQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IENGLQAMIW GMVVVLAFML VYYRAFGVIA
NLALCANLIM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA LSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRA
IVNALWGGKR VKKLSI
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