Gene Sama_2161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2161 
Symbol 
ID4604411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2610899 
End bp2611429 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content57% 
IMG OID639781546 
Producthypothetical protein 
Protein accessionYP_928036 
Protein GI119775296 
COG category[S] Function unknown 
COG ID[COG2840] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.931717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAAGA TTATCTCCCA CGAAGGCCTG GAGGATTTTC AGGCGCTGGT CGATGGCATT 
CGCCCTCTGA CCCAGGACAA ACAACACTTT GGCACGCCGC TGAAAACCAA GGCCGAGCTC
ACGGAGCAGG CGCCACAGCT CGCGGCCAAT CATTATTTCT CCGATACCTT TCAGCCGCTA
TTGCCGGTAG ATGGCCCCAT GCGCTGGCGT GCCGAACATG CGGATAATCT GGTGCTTAAA
CGCTTGCGCC GGGGCGATTA TGTGCCTGAT TTGATTTTGG ATGTGCACGG CATGCGTCAA
ACTGAGGCCA AGCTTGAACT TGCAGCGCTT ATTGAAGCGG CCATTCGCGA GCAGTGCCAG
TGTGTGAGTG TGATGCACGG CTATGGCACT GGAGTGCTGA AACAGCAGAT CCCCCTGTGG
CTGGCACAGC ATCCCAAGGT GTTGGGATTT CATCAGGCCC CCAAAGAATG GGGCGGCGAT
GCCGCACTGC TGGTGTTGAT TGACCTGGGC GACCAGCCCC ACCGGCGCTG A
 
Protein sequence
MTKIISHEGL EDFQALVDGI RPLTQDKQHF GTPLKTKAEL TEQAPQLAAN HYFSDTFQPL 
LPVDGPMRWR AEHADNLVLK RLRRGDYVPD LILDVHGMRQ TEAKLELAAL IEAAIREQCQ
CVSVMHGYGT GVLKQQIPLW LAQHPKVLGF HQAPKEWGGD AALLVLIDLG DQPHRR