| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2145 |
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| Symbol | |
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| ID | 4604395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2589979 |
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| End bp | 2592063 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781530 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_928020 |
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| Protein GI | 119775280 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.393649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.847419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGCCCAC CGGGAATTTT CGCTACATTT ACTGTAAATT CATCCAGTGC TTTTGCACCA
GAATATCCCG CCATGATCCT CTATATCGCC GAAAAACCGA GCCTCGGCCG CGCCATCGCT
GAGGTGTTAC CCAAACCCCA TAAAAAGGGT GAGGGTTATA TTGAGCTTGG CAACGGCGAT
TGTGTCACCT GGTGTATTGG CCACTTACTG GAGCAGGCCG AGCCGGATGC GTATTCTCCC
GAATACAAGC AGTGGCAGCT TGCCCATCTG CCCATTATTC CCGCCGAGTG GAAACTCACT
CCACGAAGTT CGGCCAAAAG TCAGCTGGCA GTCGTAAAGC GCCTGATTAA ACAGGCTTCT
TCTTTGGTTC ATGCAGGGGA CCCGGACCGC GAAGGACAGC TTCTGGTGGA TGAGGTAATT
TCCCACGCCA AGGTTTCTGC ATCCAAATTG GCCTCCACCC AGCGCTTATT GATTTCCGAT
TTAAACCCCG ACGCGGTGCG CCGCGCACTG GGACAGCTTC GCAGCAATAA GGAGTTTGTG
CCGCTTGCCA CATCGGCATT GGCGCGCAGT CGTGCCGACT GGCTTTACGG CCTGAATATG
ACCCGTGCTT ACACGCTTCA GGGCAGAAAG GTGGGGTATG CAGGGGTGTT GTCTGTCGGA
CGGGTGCAAA CCCCATTATT GGGTTTGGTG GTTCGCCGTG ACCTGGACAT TGAGCACTTT
GAGCCCAAAG ATCACTATGA GGTGCTTGCT CACATTACCA CAGACAAGGG CGAGTCCTTT
TGTGCCAAGT GGCAACCCAG CGAAGCTTGT CAGCCGTACA TGGATGAAGA GGGGCGGGTG
CTTTCACGCC GCCTCGCCGA AACTGTGGTG AGCCGCATTG GCGGTAAGCC GGCACTGGTT
GAGCATGTCA GCCATAAAGA CAAGAAGCAG GCGCCGCCAT TGCTGTATAG CCTCTCGGCG
CTGCAAATCG ATTGCGCCAA ACGTTTTGGG ATGAGTGCCA AAGAGGTGCT GGATACGGCC
CAGAGCCTGT ATGAGCGACA CAAGCTGATT ACCTATCCCC GCTCTGACAG CCGTCATTTA
CCCAAAGAAC AACTTGCTTT GGTGCCTGAT GTGCTGTCGG CCGTCAGTGC CAACGCCCCT
GAGCTTTTGG AAGGGGCGCC GTCACCTGAT TTGCACTTGG TGTCCAAGGC CTGGGATGAC
AGTAAGGTGG ATGCCCACCA CGCCATAGTG CCAACGGGCA AACGAACGGC GCTGTCGCAA
CTTAACCAGC GGGAGCGTCA GCTTTATTTG CACATTGCAC GGCAATATTT GGCGCAGTTT
TACCCCAATC GCCTTCTGGC AGATACCGAA ATCCAGCTGA TTATCGAAGG CGGTAGCTTT
ATCGCAAGGG CGTCGGTTGA GCGAGCCCCA GGTTGGCGGG TATTGTTTCA GGGACGCAGC
ACAGAGCAGG ACGAGGCGAA AGAGCCACAA GAGACTGATG CCAGCCAAAA GACGCCCTTG
CCAGCCCTGA ATAAGGGCGA CATTGCCCGG TGCTGTCATG GTGAGTTATT GGCAAAGCAA
ACCCAACCCC CAAAACACTT TACCGATGCG ACCTTGCTCA GTGCCATGAC CGGCATTGCC
CGTTATGTGA GTTCACCGGA CATTAAACGT ATATTGAAGG ACACGGATGG CCTTGGCACC
GAAGCGACCC GGGCCGGGAT CATCGAACTT CTGTTTAAAC GTGGCTTTCT GGTGCGCCAG
GGTAAAAGCA TCGTGGCATC CCAAGCCGGG CGGGGGTTAA TTGCCAGCTT GCCTGAGGTG
GCCACCACTG CCGATATGAC CGCCCTGTGG GAGCGTCAGC TCAGCGATAT TTGCCAACGT
CAGCTTTCCT ATAAAGGCTT TATGACACCA CTGGTATTGG AACTTGAAAA GTTGATTGAG
CAGGCCGCTG CCAGTTTACC GACCGCTCTG GCCGGCGTGA CAGCGGCAGG GCCTAAACGG
TCTTTCAGAG GCAGAGCTGG CAAGGGGAAA GGGCGTGCTC CCGGGGCAAG TGCTGGCAGA
GGTCGCAAAA GCCGGTCAAG CCCAAGCGGC AAGGTTGCAA CTTGA
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| Protein sequence | MRPPGIFATF TVNSSSAFAP EYPAMILYIA EKPSLGRAIA EVLPKPHKKG EGYIELGNGD
CVTWCIGHLL EQAEPDAYSP EYKQWQLAHL PIIPAEWKLT PRSSAKSQLA VVKRLIKQAS
SLVHAGDPDR EGQLLVDEVI SHAKVSASKL ASTQRLLISD LNPDAVRRAL GQLRSNKEFV
PLATSALARS RADWLYGLNM TRAYTLQGRK VGYAGVLSVG RVQTPLLGLV VRRDLDIEHF
EPKDHYEVLA HITTDKGESF CAKWQPSEAC QPYMDEEGRV LSRRLAETVV SRIGGKPALV
EHVSHKDKKQ APPLLYSLSA LQIDCAKRFG MSAKEVLDTA QSLYERHKLI TYPRSDSRHL
PKEQLALVPD VLSAVSANAP ELLEGAPSPD LHLVSKAWDD SKVDAHHAIV PTGKRTALSQ
LNQRERQLYL HIARQYLAQF YPNRLLADTE IQLIIEGGSF IARASVERAP GWRVLFQGRS
TEQDEAKEPQ ETDASQKTPL PALNKGDIAR CCHGELLAKQ TQPPKHFTDA TLLSAMTGIA
RYVSSPDIKR ILKDTDGLGT EATRAGIIEL LFKRGFLVRQ GKSIVASQAG RGLIASLPEV
ATTADMTALW ERQLSDICQR QLSYKGFMTP LVLELEKLIE QAAASLPTAL AGVTAAGPKR
SFRGRAGKGK GRAPGASAGR GRKSRSSPSG KVAT
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