| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2124 |
|---|
| Symbol | |
|---|
| ID | 4604374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2569814 |
|---|
| End bp | 2570701 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639781509 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_927999 |
|---|
| Protein GI | 119775259 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.380507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.682206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA AGTTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG ACGAGTGAGT ATCAACGGCG AAATCGCCAA CCTCGGAGAC
CGGGTAGATG CCGACGCCAA AGTGCGTCTC GACGGTCGCC TGGTGTCTAT CAAGTCAGCC
GACGATATCA TCTGTCGTGT GCTGGCTTAC CATAAGCCAG AGGGTGAAAT TTGCTCCCGC
AAAGACCCGG AAGGCCGTCC CACGGTATTT GACCGCCTGC CCAAGCTGCG TGACGCCCGT
TGGGTGGCAG TGGGTCGTCT GGATATCAAC ACTTCGGGCC TGTTGCTGTT TACCTCTGAC
GGTGAACTGG CTAACCGCCT GATGCACCCG TCCAACGAAG TTGACCGTGA GTATGCTGTG
CGTACCTTTG GTGAAGTGAA TGACTTTACC ATTCAAAAGC TGCGTACCGG CGTGATGCTT
GAAGACGGTC CGGCGCAGTT TGATTATGTA AAGGCTGCCG GTGGTGAAGG TGTCAACCAA
TGGTGGCACG TGGGACTGCG CGAAGGGCGT AACCGTGAAG TGCGCCGCCT GTGGGAATCC
CAGGAAGTGC AGGTGAGCCG TCTTATCCGC GTGCGTTACG GTATGATTGA ACTGCCGAAA
ACCTTGCCCC GTGGTGGCTG GATTGAACTG CCGCTGGAGC AGGTAAACTA CCTGCGTCAG
CTGGCTGGTA TGGATCCTGA AACCCGCTCC ATGATTGGTA CCGACAAGCA CAGTGTGGCG
CGTGCGTCCC AGGTGCGCAG CGCCAAAATT CGCCGCGCAG TGCGCAAGAG CAAGGTAGGC
GCCGCCACCG GCTCAAAACG TCCCAAGCCC ACTCGCACCC GCAGTTAA
|
|---|
| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRVS INGEIANLGD RVDADAKVRL DGRLVSIKSA
DDIICRVLAY HKPEGEICSR KDPEGRPTVF DRLPKLRDAR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVDREYAV RTFGEVNDFT IQKLRTGVML EDGPAQFDYV KAAGGEGVNQ
WWHVGLREGR NREVRRLWES QEVQVSRLIR VRYGMIELPK TLPRGGWIEL PLEQVNYLRQ
LAGMDPETRS MIGTDKHSVA RASQVRSAKI RRAVRKSKVG AATGSKRPKP TRTRS
|
|---|
| |