| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2095 |
|---|
| Symbol | |
|---|
| ID | 4604345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2539113 |
|---|
| End bp | 2540435 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781480 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927970 |
|---|
| Protein GI | 119775230 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2056] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.425927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATT CCGTGGTTAT TGCCGTGTGC CTGATGCTTG CATTAAGCCT TGCACGGGTA
AATGTGGTTA TTGCGCTGAC CATCAGTGCA CTGGTCGCCG GGCTTTGGGG CGGTATGGGG
CTGACGGCCA CCATTGATGT CTTTAATACC GGGCTTGGCG GTGGTGCCCA GATAGCACTG
AGCTATGCAC TCCTTGGAGC CTTTGCCGTG GCCCTGTCAC ATTCGGGGCT GACCACGGTG
ATTTCCCGCG CGGTGATTAA AAAGCTCGGC CGGGAAAACG ATGCCAAAGC CCTGGGTACT
GTGCGTATGT TGCTCTTGGT TTCACTGCTT GCCATGGCCA TGGCGTCCCA GAACATTCTG
CCTATCCATA TCGCCTTTAT CCCGATTCTG GTGCCGCCGC TGCTGCACCT GATGTCCAAG
CTCAAGCTTG ACCGCCGTCT GGTGGCCTGT GTGCTCACCT TTGGTTTGGT GACCACCTAT
ATGGTGCTGC CTGTGGGCTT TGGCGGTATC TTCCTGAACG ATATTTTGCT GGCCAACCTC
ACCGGCAATG GTCTTGAGGC CAGTCGCGAG CAAGTGCCCG GTGCCATGCT TATTCCGGCA
CTTGGGATGA TCCTTGGCCT GCTTATCGCT GTGTTCATCA GTTACCGTAA ACCCAGAAAC
TATGTGGAAG AGAAAATTCT CGCCGCCGAG CCCGAAGAGC GCATCCAGGG GCGCAGCCTG
ATTATCGCCG CGGTTGCCAT TGTGGCGACT CTGGTGGTGC AACTTCAGAC CGACTCCATG
ATTTTTGGTG CCCTGATTGG TTTTATGGTG TTCAGTCTCT CGGGCGCGAT TAAGCATGTG
GCCGATCAGG ATATCTTCAC CCAGGGCGTG CGCATGATGG CCAATATCGG TTTTATCATG
ATTGCCGCCG CTGGCTTTGC CGCTGTGGTC AAGGCCACAG GCGATGTGGG TAATCTGGTG
TCGTCCTTAG GCGAACTGAT TGGTGATAAT AAGGCGCTGG CGGCGTTCCT GATGCTGCTG
GTAGGCTTGC TTATCACCAT GGGAATTGGC TCCTCCTTTT CTACTATCCC CATTATCGCC
ACCATCTATG TGCCATTGGC GCTGTCGTTT GGTTTCTCGG TACCGGCCAC CATTGCCCTG
GTCGGCACCG CAGCGGCGCT GGGTGATGCA GGTTCACCTG CGTCTGACTC TACCCTGGGC
CCTACTGCAG GACTTAACGC CGATGGACAG CACGACCATA TGCGTGACAG CGTGATCCCA
ACCTTCATCC ACTACAACAT TCCGTTGTTG GTGTTTGGCT GGATTGCGGC CATGGTGCTA
TAA
|
|---|
| Protein sequence | MMNSVVIAVC LMLALSLARV NVVIALTISA LVAGLWGGMG LTATIDVFNT GLGGGAQIAL
SYALLGAFAV ALSHSGLTTV ISRAVIKKLG RENDAKALGT VRMLLLVSLL AMAMASQNIL
PIHIAFIPIL VPPLLHLMSK LKLDRRLVAC VLTFGLVTTY MVLPVGFGGI FLNDILLANL
TGNGLEASRE QVPGAMLIPA LGMILGLLIA VFISYRKPRN YVEEKILAAE PEERIQGRSL
IIAAVAIVAT LVVQLQTDSM IFGALIGFMV FSLSGAIKHV ADQDIFTQGV RMMANIGFIM
IAAAGFAAVV KATGDVGNLV SSLGELIGDN KALAAFLMLL VGLLITMGIG SSFSTIPIIA
TIYVPLALSF GFSVPATIAL VGTAAALGDA GSPASDSTLG PTAGLNADGQ HDHMRDSVIP
TFIHYNIPLL VFGWIAAMVL
|
|---|
| |