| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2044 |
|---|
| Symbol | |
|---|
| ID | 4604294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2480486 |
|---|
| End bp | 2481460 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781421 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_927919 |
|---|
| Protein GI | 119775179 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.47923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGA CTTTGCTCGG CGCCGCTACG GCGTTATGGG GTATGAAAGA GCTTGAAACC
TTTGCCAACA GGCCTCTGAT GCTTGAGCAG GCGAGGGAGC TGGAACTCAA TCGGGGAACC
AATGCCCGCG CATTGGGCAA AGAGTTGGTT GAGCAGGGAC TCCTTGAAGG CTCATGGCAT
TACGATTGGT ATCTGCGATT AAATCCCGCC ATGGCGGGCA TTCGTCAGGG GTTGTACGAA
ATCACCCCAG GCGACACGGT CAAGTCACTG CTTGAAAAGC TCATCAGCGG TAAAGTGAAG
GACTTCGCAA TCACTTTGGT TGAAGGCCAA ACGCTGCGGG AATGGCAGGC TAAGCTGGAA
ACTGCCCCCA GGCTGAATTG GGACGCGGAT GTTTTCCATA AGGTTCTCAA GGCGAACGGT
GATGATTCCG GATTGCCGGA AGGGAAATTT TTTCCCGATA CCTACAGCTA TCCTGCCAAC
CAGGATGTGG AAACGCTGCT TACCCAGAGC TACCTGAAGA TGCAGCAAGA GCTGGCAGCG
GCCTGGCAGG TCAGAGCTCC CGATTTACCT CTGGCGAGCG CCTATGAGCT GCTTATCCTG
GCGTCCATTA TAGAGAAAGA GACCGGCAAG GCCGAGGAGC GCCCCTTGAT TGCTGCGGTG
TTTATCAACC GGCTGCGAAA GGGAATGCGA CTGCAGACAG ACCCCACGGT GATTTATGGC
ATGGGAACGC GCTTTAACGG CAATATCACC CGTAAAGATC TGCGTGAGGA TACGCCCTTC
AACACCTATC GCATTCAAGG ACTGCCACCT ACGCCTATTG CGGCACCCGG ACGTGAAGCC
TTGATGGCGG CGGCACAACC GGCACAATCA GATTATCTTT ACTTTGTGTC CAGAAACGAT
GGCAGCCACG TATTTTCCCG CACACTCGCT GAACACAATC GCGCAGTAAA CCAATTTCAG
AGAAAACAAA AATGA
|
|---|
| Protein sequence | MSLTLLGAAT ALWGMKELET FANRPLMLEQ ARELELNRGT NARALGKELV EQGLLEGSWH
YDWYLRLNPA MAGIRQGLYE ITPGDTVKSL LEKLISGKVK DFAITLVEGQ TLREWQAKLE
TAPRLNWDAD VFHKVLKANG DDSGLPEGKF FPDTYSYPAN QDVETLLTQS YLKMQQELAA
AWQVRAPDLP LASAYELLIL ASIIEKETGK AEERPLIAAV FINRLRKGMR LQTDPTVIYG
MGTRFNGNIT RKDLREDTPF NTYRIQGLPP TPIAAPGREA LMAAAQPAQS DYLYFVSRND
GSHVFSRTLA EHNRAVNQFQ RKQK
|
|---|
| |