| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2036 |
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| Symbol | |
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| ID | 4604286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2473361 |
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| End bp | 2474008 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781413 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_927911 |
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| Protein GI | 119775171 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00199441 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATTT TCAGGCAAAA TCAGCACGGA TCCCACTATG ATAGAAGCTC GTCTCCTATC
AATATCAAAG GTATGCAGGA TTCAAAGCCA GATATCAGTG AAGAAACATT GCGCCACTGG
TTGGTGGCGG TAGCCAATAA CAGGGACAAA TCGGCCTTCC GCGCCCTGTT TGATCATTTT
GGCCCCAAGG TCAGATCCTT TGGGCTGTCG CGTCTTTCGC AACAAGGTCT CGCAATGGAC
TTGGTGCAGG AAACCCTCAC CACGGTATGG ACCAAAGCGC ATCTTTTCGA TACCGATCGG
GGAAATGTCA GTACCTGGGT GTACGCCATC ATGCGAAATC AGTGTTTTGA CATGCTCAGA
CGGGTCCAAC ACAACCGGGA AGATGCCTTT GGTGACGACA TTTGGCCTTT ATTCGATGTC
GATACCCATG CGGGCGACCA TGGCGACCAT AAGTTGGACG CATTGCTTAA CCAATATCTT
TCAAAGCTAC CCAAGCTCCA ACGTGAGGTG GTTCAAGGCA TATATCTTCA GGAACTCAGC
CAACAGGAAC TGGCCGACCG ACTCGGCGTT CCCTTGGGTA CCATCAAGTC CAGATTGCGC
CTGGGCCTTG AGAAACTGAA AAGCCTGCTG GAGAAACATC ATGATTAA
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| Protein sequence | MQIFRQNQHG SHYDRSSSPI NIKGMQDSKP DISEETLRHW LVAVANNRDK SAFRALFDHF
GPKVRSFGLS RLSQQGLAMD LVQETLTTVW TKAHLFDTDR GNVSTWVYAI MRNQCFDMLR
RVQHNREDAF GDDIWPLFDV DTHAGDHGDH KLDALLNQYL SKLPKLQREV VQGIYLQELS
QQELADRLGV PLGTIKSRLR LGLEKLKSLL EKHHD
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