| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2016 |
|---|
| Symbol | |
|---|
| ID | 4604266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2450269 |
|---|
| End bp | 2451612 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639781393 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_927891 |
|---|
| Protein GI | 119775151 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACAA TTTGGACGCC TACGCTGGAA AACTTCAGTG GCAGTAAGTA TGAACAGCTG
GCCAATGCCA TAGGTGACGC CATTACCCGG GGAGAACTGG CGCCGGGTTC CAAACTGCCG
CCTCAGCGCC GACTCGCCGA TGCACTGGGC GTCACCCTGG GCACAGTCAC CCGCGCTTAT
ACCAAAGCCA TTTATCGCGG TTGGGTGGAG GCGCGTGTAG GTGATGGCAC TTATGTACGC
ATGGCGGAGC CCAAAAGCAC GGGCCCCCTG GATTTGGCAA CCTGCCAGCA GGCGGTAACC
GACCAGGCCG CTTTCCTCGG AGAAGTGATG AGCCGCATGG GGCGCGACCC GGTTCGCTTG
GCTGGTCTGC TTGATTACCA CACGGCAAAT CTTGAGGCGC AGCAAGAAAC TGTGCTGACG
TTTTTAGCCC GCTCCGGCGT CGATGATTTT GGGGGGAAGC TCGTTTTTAC CCATGGGGCA
CAGCAAGGGC TGTTTGCCGC ACTCGCGGCT ATATGTGAAC CTGGCGACTG GGTATTACAT
GAGGCCTGGT GTTATCCGGG GTTGAATCGC GCCGCCGAAG CCCTGAGCCT GAATCTGTGC
GGCGTGTCAT TACTGGATGA TGGTCTTAAT CTGGATGAAC TTGCCGCCTG CATCGATAAA
CACAAACCCA AGGCCATTTA TCTGACCCCT AACAGCCAGA ATCCCGGCTG CATCGGCTAC
AGTGGTGCGC AGCGGCAACG CATTCTGGCC CTTGCCAGAG CCCACGACAT CATCATTATT
GAAGATGATG TGAATTACTG CACATCACAG GAGTGGAGCG CCCCCATTTG GCAACTGGCC
GCCGATGCAC AATCTGTGGT GTATTTGAGC AGTCTGTCGA AGCGGTTTGC CGGTGGTATT
CGATTTGGCT TTATGTTGCT GCCCGCAAGA TTGCAGCCCA GGGTCAATCG CATCATACAT
GCCCACTGCT GGATGGTGTC GCCGCTGCTG ATTGAAATTG GCTGTGAACT TATTCGCTCG
GGGGGCATTC ACCAACACAG AGATGCCTGG ATAGCCTCAC TGCAACAGCG ATTTTTGACC
ATGGCAGAGT CCCTCGATTT GGAGGCCAAA AGTCGGGGGC TCAACGGCCG CCTGACACTG
CCAGAAGGTT TCAGGGCCAG TAATGTAATA GCGGCGCTTG CCGCCAAAGG CATACTGGCC
CGCAGCCTCG CCGACTTTGG CGGACCGGCA AACGGGATCA GATTCAGCCT GGGTCGTATT
CCACGGGGCG AAGAAGATGA GGTATTCGAC AGGATACAAA GCACCCTGAC CGACGTCCTC
AATCAGGGCA TTGCCGTGGT TTAA
|
|---|
| Protein sequence | MRTIWTPTLE NFSGSKYEQL ANAIGDAITR GELAPGSKLP PQRRLADALG VTLGTVTRAY
TKAIYRGWVE ARVGDGTYVR MAEPKSTGPL DLATCQQAVT DQAAFLGEVM SRMGRDPVRL
AGLLDYHTAN LEAQQETVLT FLARSGVDDF GGKLVFTHGA QQGLFAALAA ICEPGDWVLH
EAWCYPGLNR AAEALSLNLC GVSLLDDGLN LDELAACIDK HKPKAIYLTP NSQNPGCIGY
SGAQRQRILA LARAHDIIII EDDVNYCTSQ EWSAPIWQLA ADAQSVVYLS SLSKRFAGGI
RFGFMLLPAR LQPRVNRIIH AHCWMVSPLL IEIGCELIRS GGIHQHRDAW IASLQQRFLT
MAESLDLEAK SRGLNGRLTL PEGFRASNVI AALAAKGILA RSLADFGGPA NGIRFSLGRI
PRGEEDEVFD RIQSTLTDVL NQGIAVV
|
|---|
| |