| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1989 |
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| Symbol | |
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| ID | 4604239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2416434 |
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| End bp | 2419859 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639781366 |
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| Product | ribonuclease E |
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| Protein accession | YP_927864 |
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| Protein GI | 119775124 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.378047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0201653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGCACA GTAATCTGAG ATCAGGCCCG GAATGCACCG ACTTTTCTCC GGTGACCCAT
TTAAAGAAGA ATGACGTCAC CATGAAACGT ATGCTAATCA ACGCAACTCA ATCTGAAGAG
TTGCGCGTTG CCCTTGTTGA TGGGCAACAA CTCTATGATC TGGATATCGA AAGTCCAGGA
CACGAACAGA AAAAAGCCAA CATTTACAAA GGTAAAATTA CCCGCGTAGA ACCCTCTCTC
GAAGCCGCCT TCGTTGATTA CGGCGCCGAG CGTCACGGCT TCCTGCCACT CAAGGAAATT
GCCCGCGAAT ACTTCCCGAA AGGTTACTCC TTCCAGGGCC GCCCCAATAT TAAAGAGGTG
GTGAGCGAAG GTCAGGAAGT TATTGTTCAG ATTGATAAAG AAGAACGTGG CAACAAGGGC
GCTGCCCTGA CCACCTTTAT CAGCCTGGCT GGCTCCTATT TGGTTCTGAT GCCCAACAAC
CCCCGCGCCG GTGGTATTTC GCGCCGTATC GAAGGTGATG AGCGCACTGA ACTCAAAGAG
GCCATGGCCG ATTTGGAAGT CCCTAACGGC ATGGGCCTTA TCGTGCGTAC CGCCGGGGTG
GGTAAAGATG CCGCCGAACT GCAGTGGGAC CTTAAAGTGC TGCTGCGTCA CTGGGATGCC
ATTAAGGAAG CTTCTGAGAG TGGCCCAGGC CCCATGCTCA TCCATCAGGA AAGCAACGTT
ATCGTGCGCG CCATTCGCGA TTACCTGCGC CGCGATGTGG GCGAAATCCT GATTGACCAT
CCAAAGATTT TCGAACAGGC CAAACAGCAC ATCGCCACAG TTCGTCCTGA CTTCGTTGAG
CGAGTGAAGC AGTACAAGGC CGAAGTGCCA CTGTTCACCC ACTATCAGAT TGAGTCTCAA
ATCGAATCTG CGTTCCAGCG TGAAGTGCGT CTGCCCTCTG GCGGTTCTAT CGTTATCGAC
CCCACCGAAG CCATGACTTC AATCGATATC AACTCTGCCC GTGCCACCAA GGGCGGCGAT
ATCGAAGAAA CCGCGCTGAA CACCAACCTG GAAGCCGCCG ACGAGATCGC CCGTCAGCTG
CGTCTGCGTG ACCTTGGCGG CTTGATTGTT ATCGACTTTA TCGACATGAC GCCTGTGCGC
CATCAGCGTG AAGTGGAAAA CCGTCTGCGT GACGCCGTCC ATCAGGACCG TGCCCGTGTG
CAACTGGGCC GTATCAGTCG CTTTGGCCTG ATGGAAATGT CCCGTCAGCG CCTGCGTCCT
TCACTGGAAG AATCAGCCGC ACATATTTGC CCACGCTGTC ATGGCCAGGG CACTATCCGC
GGTACCGAAT CGCTGGCCTT GTCTATCCTG CGTCTGATGG AAGAAGAAGC CATCAAGGAC
AACACATCTC AGGTTGAAGC CATAGTGCCT GTGGATGTTG CCGCGTTTCT GCTGAACGAA
AAACGTAAAG CCATTCGTAT CATCGAGCAG CGCCACGAGG TTGAAGTGTA CGTGATCCCG
GATCCGCACA TGATGACCCC AGAGTACAAG GTGATTCGTC ATCGTCAGGA CGATGAAATC
GAAGAAGCCA GCTACAAACG CGTTGAAAAG CCTGAAGCAA AGCTGTATGA GCCTCGCAAA
CTGGAGCGCG CTCAGGCCCC CGAGCCCGTT CTGAAAGGTT TCTCTGCCCC ATTGGAGTCA
CCGCCTGCAG CCGCGCCCAA GGTCGAAGCC AAACCTGTAA AAGCGGCCAG CGAAGTCAAG
CCTGGTTTCT TCAGCCGTCT GTTTGCAGCC ATAGGTTCTC TCTTTGGCGG TGACAACACC
GAAACCGAAG AGAAGAAGGC CCCAGCCCGT AATGGCCGTC AGCAGAACAC CCGTGGTCGT
AACCGTCGCA ACGACAACCG TCGTGACGAT GGCCGCCAGG AAGGTCGCAG CGCCGACAGC
CGCCGTGATG ACAGTCGTCG TGAAGACGGT GACAAACGTC GCAGCTCTGA CAGCCGTCGT
GGCCGTAACA AGCCGGAACA GGCCGACGAC AAGCAGCTGC GTGACAAGAG TGACAAGCCA
CGTGACGAAA GACCCAAGCG TGAGCGTGCG CCCAAACGTG AAAAGCCAGA AACTGTTGAA
GCAGCCGATG ATGCGGTAGA GCCAAAGCAG GAAGCCGTGC GTGAACGTCG TCAGCGCCGT
AATATGCGCC GTAAAGTGCG TTTGGATGAT GGTGCTGCCC AGGAAAATCT GGATGCCGTT
AACGCGCAGG AATCCACTGA AGATACTGCC GCTGAATCAA CCCAGGTTGT GGCTAAAGAC
AAGTCTGACG AGAAGCAAAC CCGCAGTCGT CGCCAGCCTC GCAAGCCAAA AGTGGAAGAA
AAAGCCGCTG AAACCGAACA GGACGTCACT GATGCCGCAA ACAGTAGCGA CGCAGCTGTT
GCCACCACCG ACGTGGTCGC CGCTCCTGTC GTCGAAGCTG TGAGTGAAGT GGGCACTGCA
GCAACAGACA TGTTGGATTC AGACGCTCAA GCTGCTGACG ACGCTCAGGA CGACACCGAC
GGCGAAGACA AGCCACGCCG TGATGGCCGT GACGGTCAGC GTCGCAGTCG CCGCAGCCCA
CGTCATCTGC GTGCTGCAGG TCAACGACGT CGCCGCGATG AGCAAGAGCA GCAAACCGGC
GCCGAAGGTG GTGAATTGGC TCAGGCCGAA TTGGATCTGC CACAGGCCGA TGTTGATGCT
GCCGGCGCTC CTGCCGCTGC ACCTCAGGAT GTTGTTGCGA AAGACACTGC AGCTTCAGAA
GTCGTTACTC AGGAAAGCGT GCTTGAAAAG GCCGAAGAAA CTGCCGATGT GGTTATCGTT
AACGATACTC CCAAAGCAGA AGCGCCTGTA GCCGGAGCCG TTGTCGCTGA CACAGCCGCT
GAGGTAGTGG TCGAGGTTGC GCCAGCCGCA GCAGTCGTTG ACACACCTGT TGCCGCAGTT
GAAGCACCTG TTGCCGAAAC GGCAGCCCCA GTAGTTGAAG ACGCTGTAGT TGAAGCCCCA
GTAGTTGAGA CTGCTGCACA GGCGCCGGCT GTGGCTGTAG AAAGCAACGC CGTTGAAACC
AAGGCTGAAG AAGCTAAAGC CGCCGAGCCC AAAGCTGCTG AACCTAAAGC TGCGGAAAAA
GTGACTTCAA CTGCCCCGAT GGCCAAACCC GCAGCAGTGA TGCCAGCCCG CGTCAAACCG
GTTGAAAAGC CTGTCGCAGA TGTCGCAGCT GATATTGCCC CCACCAAGGC AACTGCCGCT
CCAGCCCGCC CCGCAGGCAG CCGTTTCGGT AGCATGGTAA GTTCAGAAAT GACCAAGCCA
AGTATTGAAG CCCGCGAACA GGTTGCTACG CCCAAGGGAC GTGAGTATGA AGCTGCAAGT
ACTGACGCCA GCAGTGCCAA GGTGCAAAGC AGTAACAGTG CTGGCTCAGA TATGGCCCGC
CCGTAA
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| Protein sequence | MRHSNLRSGP ECTDFSPVTH LKKNDVTMKR MLINATQSEE LRVALVDGQQ LYDLDIESPG
HEQKKANIYK GKITRVEPSL EAAFVDYGAE RHGFLPLKEI AREYFPKGYS FQGRPNIKEV
VSEGQEVIVQ IDKEERGNKG AALTTFISLA GSYLVLMPNN PRAGGISRRI EGDERTELKE
AMADLEVPNG MGLIVRTAGV GKDAAELQWD LKVLLRHWDA IKEASESGPG PMLIHQESNV
IVRAIRDYLR RDVGEILIDH PKIFEQAKQH IATVRPDFVE RVKQYKAEVP LFTHYQIESQ
IESAFQREVR LPSGGSIVID PTEAMTSIDI NSARATKGGD IEETALNTNL EAADEIARQL
RLRDLGGLIV IDFIDMTPVR HQREVENRLR DAVHQDRARV QLGRISRFGL MEMSRQRLRP
SLEESAAHIC PRCHGQGTIR GTESLALSIL RLMEEEAIKD NTSQVEAIVP VDVAAFLLNE
KRKAIRIIEQ RHEVEVYVIP DPHMMTPEYK VIRHRQDDEI EEASYKRVEK PEAKLYEPRK
LERAQAPEPV LKGFSAPLES PPAAAPKVEA KPVKAASEVK PGFFSRLFAA IGSLFGGDNT
ETEEKKAPAR NGRQQNTRGR NRRNDNRRDD GRQEGRSADS RRDDSRREDG DKRRSSDSRR
GRNKPEQADD KQLRDKSDKP RDERPKRERA PKREKPETVE AADDAVEPKQ EAVRERRQRR
NMRRKVRLDD GAAQENLDAV NAQESTEDTA AESTQVVAKD KSDEKQTRSR RQPRKPKVEE
KAAETEQDVT DAANSSDAAV ATTDVVAAPV VEAVSEVGTA ATDMLDSDAQ AADDAQDDTD
GEDKPRRDGR DGQRRSRRSP RHLRAAGQRR RRDEQEQQTG AEGGELAQAE LDLPQADVDA
AGAPAAAPQD VVAKDTAASE VVTQESVLEK AEETADVVIV NDTPKAEAPV AGAVVADTAA
EVVVEVAPAA AVVDTPVAAV EAPVAETAAP VVEDAVVEAP VVETAAQAPA VAVESNAVET
KAEEAKAAEP KAAEPKAAEK VTSTAPMAKP AAVMPARVKP VEKPVADVAA DIAPTKATAA
PARPAGSRFG SMVSSEMTKP SIEAREQVAT PKGREYEAAS TDASSAKVQS SNSAGSDMAR
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