| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1920 |
|---|
| Symbol | |
|---|
| ID | 4604170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2346731 |
|---|
| End bp | 2347315 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639781297 |
|---|
| Product | superoxide dismutase |
|---|
| Protein accession | YP_927795 |
|---|
| Protein GI | 119775055 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0605] Superoxide dismutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00591973 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTCG AATTACCCCC ACTGCCATAC GCAAAGAACG CACTGGAACC CCATATTTCC
CAGGAAACTA TCGAGTACCA CTACGGCAAG CACCACAACA CCTACGTGGT TAAGCTGAAC
GGCCTGATCC CAGGTACCGA GTTCGAAGGC AAGAGCCTGG AAGAAATCGT AAAGACCTCC
ACCGGTGGTG TGTTCAACAA CGCAGCTCAG GTATGGAACC ACACCTTCTA CTGGAACTGT
CTGGCCCCTA ACGGCGGTGG CGCTGCCACT GGTCCGGTTG CCGATGCCAT CAATGCAGCT
TTCGGTTCTT TCGAAGAATT CAAAGCCAAG TTCACCGACG CCGCAGTGAA CAACTTCGGT
AGTGCCTGGA CTTGGTTGGT TAAGAAAGCT GACGGCACAG TTGCTATTGT AAACACCAGC
AACGCCGCCA CTCCGCTGAC CGATGATTCT GTTACTCCGA TCCTGACTGT GGATGTGTGG
GAACACGCTT ATTACATCGA TTATCGCAAC GTACGTCCTG ATTACCTGGC CCACTTCTGG
GAACTGGTAA ACTGGGACTT CGTAAACCAG AACTTCGCTG GTTAA
|
|---|
| Protein sequence | MAFELPPLPY AKNALEPHIS QETIEYHYGK HHNTYVVKLN GLIPGTEFEG KSLEEIVKTS
TGGVFNNAAQ VWNHTFYWNC LAPNGGGAAT GPVADAINAA FGSFEEFKAK FTDAAVNNFG
SAWTWLVKKA DGTVAIVNTS NAATPLTDDS VTPILTVDVW EHAYYIDYRN VRPDYLAHFW
ELVNWDFVNQ NFAG
|
|---|
| |