Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1900 |
Symbol | |
ID | 4604150 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2318577 |
End bp | 2322068 |
Gene Length | 3492 bp |
Protein Length | 1163 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639781277 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_927775 |
Protein GI | 119775035 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCACAC TCGTTCAGTC CAATCACATG GAGCGCCTTG CAAAACGCCT GGCAGACGAA CTTAATCAGG CATCAGGCAA TGTGCTGGCA ACGGAGCAGA TTTTGGTACA AAGCCCGGGT ATGGCGACCT GGCTCAGATT GGAAATCGCA GCCCACAATG GCATAGCCGC CGCCCTGAGC TTCCCCCTTC CCTCGAATTT TATCTGGTCA CTCTGTTATG CCTTGCTGCC GGGTGTCCCC AAGGAAAACG CCTTTACCAA GGACGCCATG ACCTGGAAGT TGATGGCGCT GTTGCCAAGA CTGATTGAAA AGCCCCATTT CGAGCCGCTG CGGGACTATT TAAGCAGCGA CTCTCCGCTC AAATTGTTTC AACTGGCCAG CCGGGTTGCG GACATTTTCG ACCAATATCT GGTTTACCGC CCCGATTGGA TAGTGACATG GGAACTGGGT GAAAATGACC TTAGCCCAAC TGGCAGCCCC CTCACCCAAG GTGCTGCGCT GCCCGATAAT TGTTTGTGGC AACCCCTGCT CTGGCGAGCC TTGGTACAAT ACAACCGGGA TGAACTGGGG CAAAGCCATT GGCATCGCGC CAATTTGCAT CAGGCACTGG TGGCTGCACT CTCCAACCCA AACACAGATA TCAGTGCCCT GCCCAGGCGG CTCTTTGTCT TTGGTATTTC ATCACTACCA CCCCAAACCC TGGAAGTGCT CTACGCCCTT GGCAGCCGCA TTCCTGTGAC CATGCTCAGC CTCAGTCCCT GCCGCCAATA TTGGGGCGAC ATAGTCGACA GCAAACTCAG GGCCAAGCTG GCGCTGAAAT ACAAAGCCCA CAAGATGCTG CCGGAACATT GGGAAGAAAC TCTCGAAGTG GGCAACCCCT TGCTCGCCGC CAACGGCAAA ATGGGCCGGG AGCTGCTGGA TCTGGTACTT TCGCTGCCCC CGGAGCATTT CACTCTCGAC GACAGTGGCT ATGAAACGAA CGATGACAGC CATCTGTTGG GCAGGTTGCA AAACGATATA TTGGATATGG AGGTTGCAGG TGCGCCGCTT TGTGCGGATC TCGCCCGCTA TCAGTCCAAC GAGGGCAAGT TTCTGCTGGA TGAACAGGAT AACAGCCTGG TACTGCGAAG TTGCCACAGC CCGCTTCGGG AAGTCGAAAC CCTGCACGAC CACCTCCTTG GTCTGCTGTC AGACCGTCAG GGCCGGCTCT CTGCCAAAAA CATAGTGGTG ATGCTGCCCG ATGTTGCCGC CTACGCGCCC TTTATTGATG CCGTATTTGC CTCACGCAGG GGCGAACACT ACATCCCCTA CGCTATTGCC GATCGGGGAG CAGTAGAGGA GTCTCCCCTG ATCCACGGTT TCCTGACCTT GCTCGACATC AATCACAGCC GCTTCGGCTT GTCAGAAATT CTCGGCTTGC TGGAAATTCC CGCGGTTATG GCGAAATTTA AGCTGGATGA GGAAGAGCTG TCCCGTCTCG GAAACTGGCT CAGTGAGGCC GGTGTACGCT GGGGGCGGGA TGCCCAAAGC CGGGAAAAAC TGGGCTTACC CGCCTTTGAT AAGCATTCCT GGGCCTTTGG TATCCGCAGA TTACTGCTGG GCTTTTCCCT TGGCGACGAG GGGGATTTCT ATCACGGCAC CCTGCCATTT GCAGGTGTTG AGGGCCAGCA AGCGCAGTGT GTTGGTAAAC TGCTGGATTT TATTGAGCAT CTCGATGAAT TTGCAGCACG ATTTGCTGCC GCCGATAGCC TTACACTCAA GTTCGCAGAA CTCAGCCGCC TCACCGATAC CCTGTTTGCA CCACTGCCGG AATATCAGGA AGAGCTTAAC CTCATCCGTG AAACTCTCTG TGATACCCAA AAAGCCCTTC AATCGTCGGC AAGCAGCGAA AGCAGCCTCA GCGATATTTC ACTTGAGGTT ATCTGCCAAA CCCTTGGCAG CAAGCTCACC GATGCCCGGG TCGGACAACG TTTTCTGGCG GGTTCGGTGA ATTTCTGTAC CCTGATGCCC ATGCGTTCTA TCCCCTTTAA AGTGGTGTGT TTGCTCGGCA TGAATGAAGG CATTTACCCC AGGGTGCAAC ATCCCGTGGG ATTCGACCTG ATGGCGAAAA CACCCGCACG ACGTGGCGAT CGTTCACGGC GTCTCGACGA CAGATACCTG TTTCTGGAAG CCCTGCTGTC AGCGAGAGAG CAGCTTTATA TCAGCTTTAT TGGCCGCAGC GAGCGCGACG ACAGCGAGCG CCTGCCTTCC ATGCTGGTCA GTGAATTGCT GGACTGCTGT GAACTGAGCG CTTATGTCTC CCAGGGGAAG CTGGTTAACC GTCTGGTGAA ACAGCAGCCG CTACAACCCT TCGACCACCG GCTCTACCTG ACCAATCAGG ACATCACTGC GAGCTTTGCT GCCCAGTGGT GCCCGCAGGA AACCCGTCCG CCGAAGCCCT TTATCGACGC AGTACTGGAC GAAGTGGATG AAGATGAGCA TAAAGTGCTG GAGCTTGCAT CCCTCATCCG CTTCTACCGG GATCCAGCCC GCTTTTTCTG CCAGCGACGA CTCAGACTCG ACTTGAGCCA CAGACTCGAT GCGCTGGATG ACAGCGAACC CTTTGATGTC GATGCCCTCG GGCGCTATCA ACTGCAGGAT AAGATGCTCA ACGCCGCGTT GGAAGCCGAT GAAATCAGGC AGCAACTGGC TGTAGATACG CTGTGTGACA GACTTGCCGG GGCCGGTGTT TTACCCATGG CACCGTTCGA CAAGCTGCTC TTTGCCAGTT ACCAACGGGA TCTGGCGCCC ATTCTCGACC GCTGTCGCTT TATCATGGGT GAAACTGAGG GACAAAGCCT GAGGATATCA CTCGTCCTTA ATCAAGGGCA CAAACTGGTC GGCACCATAG ACAAGGTCTT TGCAAAAGGC CTTCTGGTGG CAAGACCGGG CACCGCCAAG GCCAAAGACG TGCTGGCGCT GTATCTGCGA CACCTTTGTC TGTGCGCCTC AGGCTACCGG CAGAGCAGTT TCTTGTTGGA TGTGGGTAAC TTCCATGCCT TTTTACCCCT CACGCCCGAT AACGCCCTGA CAAGCCTTGA GGATTTTATC AGCCACTATT TCGAGTCAGT GCGCACGCCA TCTCCGCTGA TCCCTGCCCT TGCCATGACC TACATTGAGG CACTTGCCGA AGGCGCCAGT GAGGAAGAGT CGTTGGCAGA ATTGAGTACC AAATGGGATG ACGGCAATGG AATGGGCGAA ATTGCCGAGC CCCACAACGA GCGCCTGTTT GAGTTTCCTG CAAGCTTTGC CACGCCTGCA TTTACCGTCG TCGCTGAGCG GTTGTGGAAA CCGCTCCTTT GCCGCTGCCA TAGGGGTAAA CTCGGTGAAC TTGCTGACTT TGTCAGCAAC CCATCGTCAA TACCGCCCAT ATTGAGCCAC GAGGCCGACG CTTATCGGTG CGAAGCTGAT GAAAAAGCCG ATAAGGTCAC GCACCAGAGA CAGGGAGAAT AA
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Protein sequence | MFTLVQSNHM ERLAKRLADE LNQASGNVLA TEQILVQSPG MATWLRLEIA AHNGIAAALS FPLPSNFIWS LCYALLPGVP KENAFTKDAM TWKLMALLPR LIEKPHFEPL RDYLSSDSPL KLFQLASRVA DIFDQYLVYR PDWIVTWELG ENDLSPTGSP LTQGAALPDN CLWQPLLWRA LVQYNRDELG QSHWHRANLH QALVAALSNP NTDISALPRR LFVFGISSLP PQTLEVLYAL GSRIPVTMLS LSPCRQYWGD IVDSKLRAKL ALKYKAHKML PEHWEETLEV GNPLLAANGK MGRELLDLVL SLPPEHFTLD DSGYETNDDS HLLGRLQNDI LDMEVAGAPL CADLARYQSN EGKFLLDEQD NSLVLRSCHS PLREVETLHD HLLGLLSDRQ GRLSAKNIVV MLPDVAAYAP FIDAVFASRR GEHYIPYAIA DRGAVEESPL IHGFLTLLDI NHSRFGLSEI LGLLEIPAVM AKFKLDEEEL SRLGNWLSEA GVRWGRDAQS REKLGLPAFD KHSWAFGIRR LLLGFSLGDE GDFYHGTLPF AGVEGQQAQC VGKLLDFIEH LDEFAARFAA ADSLTLKFAE LSRLTDTLFA PLPEYQEELN LIRETLCDTQ KALQSSASSE SSLSDISLEV ICQTLGSKLT DARVGQRFLA GSVNFCTLMP MRSIPFKVVC LLGMNEGIYP RVQHPVGFDL MAKTPARRGD RSRRLDDRYL FLEALLSARE QLYISFIGRS ERDDSERLPS MLVSELLDCC ELSAYVSQGK LVNRLVKQQP LQPFDHRLYL TNQDITASFA AQWCPQETRP PKPFIDAVLD EVDEDEHKVL ELASLIRFYR DPARFFCQRR LRLDLSHRLD ALDDSEPFDV DALGRYQLQD KMLNAALEAD EIRQQLAVDT LCDRLAGAGV LPMAPFDKLL FASYQRDLAP ILDRCRFIMG ETEGQSLRIS LVLNQGHKLV GTIDKVFAKG LLVARPGTAK AKDVLALYLR HLCLCASGYR QSSFLLDVGN FHAFLPLTPD NALTSLEDFI SHYFESVRTP SPLIPALAMT YIEALAEGAS EEESLAELST KWDDGNGMGE IAEPHNERLF EFPASFATPA FTVVAERLWK PLLCRCHRGK LGELADFVSN PSSIPPILSH EADAYRCEAD EKADKVTHQR QGE
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