| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1895 |
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| Symbol | |
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| ID | 4604145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2311492 |
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| End bp | 2313408 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639781272 |
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| Product | soluble lytic murein transglycosylase, putative |
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| Protein accession | YP_927770 |
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| Protein GI | 119775030 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.88018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGC AGTTTTACGG CATTTGTCTC ACATCACTCA TCTTCATCAG CCCGCTGGTG
TCTGCCGATA TCAAGGATGA CCGGCAACAG TTTCTCAAGG CGGAAAAAGC CCTGCGGGAG
GGTAATAAGG CCCAGTATGC CAAGTTGAGA AAAGGCCTGG ATGATTACCC CCTGGCCGTT
TATCTCGACT TTGATGCCCA AATCGACAGT CTGGTGATGC TGCCGGGGAG TAAAGCCCAA
ACGGCGATTC AGGCATTTCA GAATACGCCT TTTTATGGCA ACGCCCGCTA CCGTTACCTG
CTCACCGCAG CCAAGGGGGC TCGCTGGGAA GATTTTCTGG CCATTAGCCC GGACGCGCCA
AAAGATACCG CGCTCCAATG CCACTACTAT CAGGCCTTAC TGGCCGTGGG TGACAAATCC
CGAGCCAATG AGGGGGCCCG CCGCTTATGG CTAAACGGCA GCTCAATGCC GGATGCCTGC
GATCCCTTGT TTACAAAATG GGCCAAAGCA GGCCATCGCA GTCAGGAGCT CATCTGGAGC
CGTATGTTCC TCGCCTTTGA TGCCCGGGAA GCGTCACTCC TGAGCTACCT GGCCCAAAAG
GTTACCAATT ACCCCAAAGA AGCCCAAAAG CTGCTTGCCC TGTACAAAGA TCCGAGAAAC
CTCAGGCACA TGGACAGATA CAAGGCCAAA GCGCCTGTCA TGGCCGAAAT GGTAGAGTTG
GGACTCAAGG CGCTGGCACG CAAAGATTTA AAAGAAGCCG TGTCATTGCT GGGTAAATAC
GAAAAATCAG GCCGTTTCAC CAAGGTACAG GCACAAAGCC TGCACGCCTT TATGGTCCGC
CGAGTGTTAC TCAGACAAGA AGAGTCTCTG CTGAGCTATG CCGAAAAACA CCTGCCACCA
CTCGCATCGG ACGATCTGAC AGAGCTGAGG CTTCGCTGGG CGATACGGGA TGGTGACGAA
AAAGCCATAA AGCAGTTTCT GCCGCTGTTA AGCCGTGAAA CGGCTGCCAA GGAACGCTGG
CAATATTGGC GTCTCAGGTA CGAGACCAGC GCTGGCGAGA GTGACACCCT CTCGGCGCAG
CTGGCTGCCG ACAGAAGTTT TTACGGATTT CATGCTGCGC AATCTCAGGG CATGAGCCCA
GCGCTCAATG AGGTTAAAGC GAGTGATGTA TCCGCTTCCT CTGATGCCAA TCTCACGCAG
GGAGCAGATC CCGCTCTGGC CAGGGTAAAA GAGCTCCTGG TCTTGGAGCG GCCACGTCAG
GCTCGTGTGG AATGGCTAGG ACTGCTTGGT CGGGAAGATG CTGCCGGCAA GGCAAAATAT
GGCAACTGGG CGCTGGAAAA TGGGCTGTTC GCCCTCTCCG TTGATGCGTC TATTCAAGGC
AAATTCTGGG ATGATTTGGG CATGCGCTTC CCTCCCGCCG AAGAGCAAAG CTTTGCCAGA
GCCGCTAAAC GCCATAAGCT CAATGCGGAA GAACTGAGAG CCATCGCCCG CCGTGAAAGC
GCGTTTAACC CCATAGCGCA GTCCGCTGTG GGTGCCCGGG GGTTGATGCA GTTGATGCCA
GCCACAGCGA AACAAACCGC CAAAAAACAA GGCATAAAGT ACAGCGGCGA GGGATCGCTG
TACGAGCCAG CACTGAATAT TCAGCTGGGC AGTGCCTATT ACGCAAGTTT ACTCGAGCGG
TATAACAATA ATCGGGTACT GGCAACGGCG GCCTATAACG CCGGACCATC GAGGGTGAAC
GCCTGGCTTG CTCGCAGTGA GGGTAAACTG GATGTGATGG CCTTCATCGA ATCCATCCCA
TTCACCGAGA CCCGGGAGTA CGTGCAGGCC GTATTCAGTT ATCGATTAAT TTACGAGCAT
CGAAAAGGCA ATACCACGCC CCTTTTCAGC GAGGCTGAGC TGAAATTCAA ATACTGA
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| Protein sequence | MLKQFYGICL TSLIFISPLV SADIKDDRQQ FLKAEKALRE GNKAQYAKLR KGLDDYPLAV
YLDFDAQIDS LVMLPGSKAQ TAIQAFQNTP FYGNARYRYL LTAAKGARWE DFLAISPDAP
KDTALQCHYY QALLAVGDKS RANEGARRLW LNGSSMPDAC DPLFTKWAKA GHRSQELIWS
RMFLAFDARE ASLLSYLAQK VTNYPKEAQK LLALYKDPRN LRHMDRYKAK APVMAEMVEL
GLKALARKDL KEAVSLLGKY EKSGRFTKVQ AQSLHAFMVR RVLLRQEESL LSYAEKHLPP
LASDDLTELR LRWAIRDGDE KAIKQFLPLL SRETAAKERW QYWRLRYETS AGESDTLSAQ
LAADRSFYGF HAAQSQGMSP ALNEVKASDV SASSDANLTQ GADPALARVK ELLVLERPRQ
ARVEWLGLLG REDAAGKAKY GNWALENGLF ALSVDASIQG KFWDDLGMRF PPAEEQSFAR
AAKRHKLNAE ELRAIARRES AFNPIAQSAV GARGLMQLMP ATAKQTAKKQ GIKYSGEGSL
YEPALNIQLG SAYYASLLER YNNNRVLATA AYNAGPSRVN AWLARSEGKL DVMAFIESIP
FTETREYVQA VFSYRLIYEH RKGNTTPLFS EAELKFKY
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