Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1859 |
Symbol | |
ID | 4604109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2262173 |
End bp | 2263750 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639781235 |
Product | phosphomethylpyrimidine kinase/thiamine-phosphate diphosphorylase |
Protein accession | YP_927734 |
Protein GI | 119774994 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [COG0352] Thiamine monophosphate synthase |
TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase [TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAAA TCAACGACAT GGCAGCTAAA CCCATCGTCT GGACTATCGC AGGCTCAGAC AGCGGCGGCG GCGCCGGTAT TCAGGCGGAT TTGCTGACGC TGCAAGACCT GGGCTGCTAT GGTTGCAGCG TGATAACCGC CATAACGGCG CAAAACTCGG TGGCGGTGAC GGCGGTTGAG CCGGTGACAC CAAGGATGCT GCGTGCCCAG CTTGAGACGT TAAAGGCGGA TTTGTACCCC AGCGCAGTCA AGATAGGCCT TATCGCCAAT CAGCCGCAGC TGGATTTTTT GGCTGACTGG CTGGGTGAAA ACTTACCCGG CGTGCCAGTT ATTCTTGACC CTGTTATGGT GGCCTCCTGC GGTGGTGACC TGCAGTCGCC AGACAATACC TGCCCCGATA AAACCGGGGA ACGGTCTGGT CTGGATTTCA GTCCCTTTGC CGGAAAAATT AGCCTTATCA CCCCCAACAA GGCGGAACTT TCCCGTCTTA TCGGCCGCTT ACTCAATGAT GACGATGCTC TGGAGTGGGC TGCCAACGTA CTGTGGCAGG CCTTTGGCGG CAGCATTCTT GCCAAGGGAG GAGATTGCCC ATGGCAGCAG TCTAAGGCCA GGGATCTGTT GCTGCTGGGT GATATTGCTA CCATTTCGCC GCTGCACAGG CGTCAGGGAT TTTGGCTCAG CAATGAGCGG GTTGCGACTG TGCACAATCA CGGCAGCGGC TGCACGCTTT CAAGTGCCAT AGCCGCCTTT GTCGCCAAGG GGTTGGTGCT GCCCGATGCG GTGCTGCTGG CCAAAGCCTA TGTATTTGAG GGGCTCAGGC AGGCAAGCGC TGTAGGTTCT GGCCCCGGGC CACTGGCCCG CACCGGCATG CCTGAGTCCC TGGCCGCTAT GGCATCGATT CACCGATTAC ATGAAAGCCG CAGTCACAGG TTGCCAACCA AGGGGTTTAC CCGCCTGGGT CATGATTTGG GCGTTTATCC CGTGGTGGCC GACATCGATA TGCTTGAAAC ACTGCTTGAG GCAGGCGCCA ACCCAATTCA GCTGCGCATC AAGGGCGAGA TTGGCCCGGG TAGCGCGGCT GAAGCGGACA TCATCCGCGC CATTGCCCTT GGCAGGCAGC ATCGGGCGCG CGTCTTTATT AACGACCATT GGCGCCTTGC CATCAGCCAT GGTGCCTTTG GGGTGCATCT TGGGCAGGAG GATATAGAGG CCGTGCCGCT GGATGCCATT GCTGAGGCTG GCATGGCCCT TGGGCTGTCG AGTCACGGGT TGTTTGAGGC CTTGCTGGCC CTTGAGCTTA ACCCCAGCTA CCTCGCCCTT GGGCATATTT TTCCCACTAC CACCAAGGAA ATGCCTTCCA AACCACAGGG GCTGGAGACG CTGGCACTTC TTGCGAAGAT TGTCAGTACA GCTGTGCCAA CGGTGGCGAT TGGCGGTATA GAGGCGGGTA ATTTGCCTGA GGTCGCTGCT ACAGGCGTGG ACAGCATTGC CGTGGTACGT GCTGTGACCG AAGCAAGCGA ACCGGCGACT GCCTTTCGCG CACTCGCTGA CGCCTGGGAG ATGCGGAATG CTCGCTGA
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Protein sequence | MAKINDMAAK PIVWTIAGSD SGGGAGIQAD LLTLQDLGCY GCSVITAITA QNSVAVTAVE PVTPRMLRAQ LETLKADLYP SAVKIGLIAN QPQLDFLADW LGENLPGVPV ILDPVMVASC GGDLQSPDNT CPDKTGERSG LDFSPFAGKI SLITPNKAEL SRLIGRLLND DDALEWAANV LWQAFGGSIL AKGGDCPWQQ SKARDLLLLG DIATISPLHR RQGFWLSNER VATVHNHGSG CTLSSAIAAF VAKGLVLPDA VLLAKAYVFE GLRQASAVGS GPGPLARTGM PESLAAMASI HRLHESRSHR LPTKGFTRLG HDLGVYPVVA DIDMLETLLE AGANPIQLRI KGEIGPGSAA EADIIRAIAL GRQHRARVFI NDHWRLAISH GAFGVHLGQE DIEAVPLDAI AEAGMALGLS SHGLFEALLA LELNPSYLAL GHIFPTTTKE MPSKPQGLET LALLAKIVST AVPTVAIGGI EAGNLPEVAA TGVDSIAVVR AVTEASEPAT AFRALADAWE MRNAR
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