| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1794 |
|---|
| Symbol | |
|---|
| ID | 4604044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2186168 |
|---|
| End bp | 2187145 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639781160 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit III |
|---|
| Protein accession | YP_927669 |
|---|
| Protein GI | 119774929 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | [TIGR00782] cytochrome c oxidase, cbb3-type, subunit III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.448855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0580758 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGATGA GTAACTTCTG GAGTATGTGG ATTAGCATAC TCACTATCCT GGTGATCATA
GGCTGCTTCG TGCTGCTGAG GATCTGTTCC AAGAACACGA CGCCTGATAT TAAAGAAGGC
GAGTCAATGG GCCACAGTTT CGATGGTATC GAAGAGCTGA ATAACCCACT GCCTAAGTGG
TGGAGCTACA TGTTCTACAT CACTATCGTG TTTGGTGTGA TTTATCTGGC GCTGTATCCA
GGTCTGGGTA ACTTCAAAGG TTTCCTGGGT TGGAGCAGCT CTAACCAGAG CATTGGTACT
GAGCAAGGTA TTAAAGCCGA CTCTAAAGCC GCCATTGAAA ACGCAGCCAA AGAAGGTCGC
TGGGTTCAGT ACGATGTTGA AGTGAAGAGT GCTGACGACA AATACGGTCA CATTTTCAAA
GAATACGCGG CAACGCCACT GGAAGAACTG GTGAAAAACC CAGAAGCGCT GAAAGTGGGG
GGTCGTCTGT TCCTGCAAAA CTGTGCCCAG TGTCACGGCT CTGACGCCCG CGGTAGCACT
GGCTTCCCTA ACCTGACCGA TGCCGATTGG CTGTACGGTG GCGATCTGGC TACCATCAAG
GCCAGTATCA TGAATGGTCG TCGTGGCATG ATGCCTCCAA AGGGTGGCTT GCCTATCGAT
GACAGTGAAA TCCCAGGCCT GGCTGAGTAT GTCGTCAGCC TGTCCGGTGG TGAGCACGAT
GCTGCGCTTG CCGCTCAAGG TCAGGGTTCT TTCATGAAGG GCTGTTTTGC CTGTCACGGT
ATGGATGCCA AAGGCAACAA GTTCATGGGC GCGCCTAACC TGACAGACAA CGTATGGCTC
TATGGCAGCA GCCGCGGCAA GATTGAAGAA TCAATCAAAT TCGGCCGCGC CGGCGTAATG
CCTGCATGGA AAGACGTTCT GGGCGAAGAA AAAGTCCACG TCATCACTGC CTACGTTTAC
AGCTTGTCTA ACAAGTAA
|
|---|
| Protein sequence | MLMSNFWSMW ISILTILVII GCFVLLRICS KNTTPDIKEG ESMGHSFDGI EELNNPLPKW
WSYMFYITIV FGVIYLALYP GLGNFKGFLG WSSSNQSIGT EQGIKADSKA AIENAAKEGR
WVQYDVEVKS ADDKYGHIFK EYAATPLEEL VKNPEALKVG GRLFLQNCAQ CHGSDARGST
GFPNLTDADW LYGGDLATIK ASIMNGRRGM MPPKGGLPID DSEIPGLAEY VVSLSGGEHD
AALAAQGQGS FMKGCFACHG MDAKGNKFMG APNLTDNVWL YGSSRGKIEE SIKFGRAGVM
PAWKDVLGEE KVHVITAYVY SLSNK
|
|---|
| |