| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1786 |
|---|
| Symbol | |
|---|
| ID | 4604036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2177808 |
|---|
| End bp | 2180177 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639781152 |
|---|
| Product | copper-translocating P-type ATPase |
|---|
| Protein accession | YP_927661 |
|---|
| Protein GI | 119774921 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR00003] copper ion binding protein
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.143553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0746934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAA CCATGCACAT TGCAGTCAAG GGGATGACAT GCGTATCCTG CGCCTCACGC
ATAGAAAAGG CACTGCTTAA GGTAAACGGC GTTGTTAATG CCACGGTTAA CCTTGCCACA
GAAACTGCAA CTATCGAAGG TGTCGCCAGC ACTGGTGATA TCAAGTCGGC CATTATTAAC
GCCGGTTATG ATGTTGAGTT GGAATCACGT CAATTTGAGG TAAAAGGAAT GACCTGCGCG
TCCTGTGCAG GGCGCGTTGA AAAGGCGTTG ATGAAAATAA GCGGAGTCGG CAGCGCCAAC
GTCAACCTGG CAACAGAACA GGTAAGCATC TCGCTGTTGG AAAACATTAC CAATGATACG
TTAGTTGCCG CTGTCAGAGA TGCGGGGTAT GAACTCATTA CCGCAGACGA GCCTGCTCAA
TCAGAACCAA AGCAGGACAA ACGCCTCGCT TTCTATCAGA AAGACAGTTG GCCTGTCATT
GGTTCAGCCA TCCTCACCCT ACCCTTAGTG CTCCCTATGA TAGGTATGTT GTTTGGGGCT
GATTGGATGC TGCCCGCTTT TTGGCAATGG CTGCTTGCGA CACCAGTACA ATTCTATTTT
GGTTCACGCT TCTATAAAGC TGGCTGGAGC GCACTGAAAG CCGGTAGCGG TAACATGGAC
CTCCTGGTTG CCATTGGTAC CAGCGCTGCT TATGGTTTGT CGTTATACCT CTGGTATAGC
TTTGACGGTC ACCATGGTGC GCCACACCTG TATTTTGAAA GCAGTGCTGC GGTGCTCACT
CTGGTCTTGC TCGGAAAATT ATTGGAAAAA AGGGCAAAAC GCCGGACTAC TGACGCATTG
CATGCGCTTG AAAATTTAAA ACCAACTACA GCGACGGTAT TACGTGATGC GCAGTGGCAA
TCAATGCCTG CCGCACAGCT GGTCTCAGGT GACGTGGTAA AAGTGCTACC CGGCGATCGC
ATTCCCGTGG ATGGCCTGGT TATCAAGGGA AGCAGCCATG TTGACGAAGC ACTAATCAGT
GGTGAGAGTA TTCCACTGCA TAAATCTCTA GACCAAAAAG TTACCGGTGG TTCAGTAAAT
CTTGACGGCG TGTTGGAGAT AAAAGCCACT GCGGTGGGCT CTGAATCTAC CCTATCTAAA
ATCATCCGTT TGGTAGAGCA GGCCCAGGGC GCCAAAGCAC CTGTTCAGGC TCTGGTCGAC
AAAATCAGCA GCATTTTTGT ACCAGTTGTC CTGCTAATCG CGACAATCAC CGTACTGACA
TGGGGTTTAT ATTTTGGGGA TTGGTCACAG GGTATTTTGC ATGCTGTAGC AGTATTGGTG
ATTGCTTGTC CCTGTGCTCT GGGGTTGGCA ACGCCTGCCG CCATCATGGC TGGAACAGGC
ACCGCAGCAC GACACGGCAT ATTGGTTAAA GATGCCATTG CACTTGAGCA AGCAACCAAG
ATTGACTACG TCGTGTTCGA TAAAACAGGT ACGCTTACCG AAGGCAAACC CGAACTCGTT
CAGATCACGG CTTTTGACGA TGCAGAGAAT GTGTTATTGG AACATGCTTA TGGGCTTCAG
CAACACAGTG AGCACCCGTT GGCAAAAGCA GTTATCAGCT ACGCTATTCG TCATCAGGTT
TCTCTACCCG AAGTAACCCA ATTCACCGTT GTCGCCGGCA AAGGAGTAAA AGGTGAAATC
CACGGTCGCA AGTTAATGTT TGGTAGTAGC CACTGGATGC GCGAGTTGGG TCTGTCTCTG
CCCACCGACA AGATTCAAAT TAAAGGCGCA TCCATATCCT GGCTCGCCGA ATTAACTGAT
GCTGGGGTTA TTCTGGCAGG CTTATTCTGC TTTGCAGATA AAGCCAAACC TGAATCAAAG
CAAGCCGTTA AAGCACTCCA GCAACGGGGG ATCAAAGTTG CGATGCTCAC GGGTGATTCC
AACGACAGTG CAGCGCAGAT AGCGGCAGAA CTTAACCTGG ACAATTATCA GGCGGAAGTA
TTGCCCCAGG GAAAAGCGGA GGCTGTCGCA CAATATCAGC AACAAGGCTT TAAGGTAGCC
ATGGTGGGTG ATGGTATTAA TGACGCACCT GCCCTCGCCC AGTCAGACCT TGGCATTGCG
ATGGCCACAG GTACTGAAGT GGCAGTCAGT GCTGCCGCCA TTACCCTGAT GCGAGGCAAT
CCTGAGTTGG TTGCATCGTC ACTTAATCTG GCATCTGCTA CTTACAGAAA TATTCAGCAA
AACCTGTTCT GGGCCTTCGC ATTCAACACG GTGGGCATCC CGCTGGCGGC AATGGGCTAT
CTGAACCCGG TTATTGCTGG TGCAGCTATG GCATGTAGCA GTGTATTGGT AATCAGTAAT
GCTTTACGCC TGCAGCGTAA AAGCTTCTAG
|
|---|
| Protein sequence | MSTTMHIAVK GMTCVSCASR IEKALLKVNG VVNATVNLAT ETATIEGVAS TGDIKSAIIN
AGYDVELESR QFEVKGMTCA SCAGRVEKAL MKISGVGSAN VNLATEQVSI SLLENITNDT
LVAAVRDAGY ELITADEPAQ SEPKQDKRLA FYQKDSWPVI GSAILTLPLV LPMIGMLFGA
DWMLPAFWQW LLATPVQFYF GSRFYKAGWS ALKAGSGNMD LLVAIGTSAA YGLSLYLWYS
FDGHHGAPHL YFESSAAVLT LVLLGKLLEK RAKRRTTDAL HALENLKPTT ATVLRDAQWQ
SMPAAQLVSG DVVKVLPGDR IPVDGLVIKG SSHVDEALIS GESIPLHKSL DQKVTGGSVN
LDGVLEIKAT AVGSESTLSK IIRLVEQAQG AKAPVQALVD KISSIFVPVV LLIATITVLT
WGLYFGDWSQ GILHAVAVLV IACPCALGLA TPAAIMAGTG TAARHGILVK DAIALEQATK
IDYVVFDKTG TLTEGKPELV QITAFDDAEN VLLEHAYGLQ QHSEHPLAKA VISYAIRHQV
SLPEVTQFTV VAGKGVKGEI HGRKLMFGSS HWMRELGLSL PTDKIQIKGA SISWLAELTD
AGVILAGLFC FADKAKPESK QAVKALQQRG IKVAMLTGDS NDSAAQIAAE LNLDNYQAEV
LPQGKAEAVA QYQQQGFKVA MVGDGINDAP ALAQSDLGIA MATGTEVAVS AAAITLMRGN
PELVASSLNL ASATYRNIQQ NLFWAFAFNT VGIPLAAMGY LNPVIAGAAM ACSSVLVISN
ALRLQRKSF
|
|---|
| |