Gene Sama_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1785 
Symbol 
ID4604035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp2177393 
End bp2177797 
Gene Length405 bp 
Protein Length134 aa 
Translation table11 
GC content46% 
IMG OID639781151 
ProductMerR family transcriptional regulator 
Protein accessionYP_927660 
Protein GI119774920 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID[TIGR02044] Cu(I)-responsive transcriptional regulator 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.370686 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0498641 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTACCC TACTGACTAT TGGAGAGGCT GCCAAAACGA GTGGACTCTC TACCAAGATG 
ATACGTCACT ATGAGCAAAC AGGATTACTG AAGAAATCCC CCCGAACTGA CTCGGGATAT
CGCCTGTATA ACAACGAGCA AATCAATCAG CTCAGATTTA TCAGGCAAGC CCGAAACCTG
GGATTTTCAT TGAATGACAT CCAATCCCTC CTTGGCCTGT GGCAAGACCC AAACAGGGAA
AGCCGATTGG TCAAACAACT CGCAACCCAG CACCTGGACG ACATAAAAAT GAAAATCAGC
GAGTTGCAAC ATATGCAGCT CATACTCACA GAGCTGGCAG AAAGTTGCTG TGGGGATGAA
AATCCACACT GTAGTATTTT GCAAAAGCTC GCAAAACCGG ATTAA
 
Protein sequence
MSTLLTIGEA AKTSGLSTKM IRHYEQTGLL KKSPRTDSGY RLYNNEQINQ LRFIRQARNL 
GFSLNDIQSL LGLWQDPNRE SRLVKQLATQ HLDDIKMKIS ELQHMQLILT ELAESCCGDE
NPHCSILQKL AKPD