Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1744 |
Symbol | |
ID | 4603994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2134055 |
End bp | 2135719 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781107 |
Product | Serine-type D-Ala-D-Ala carboxypeptidase |
Protein accession | YP_927619 |
Protein GI | 119774879 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0368458 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00325312 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGGTT TACAGGCTAC CAAAATGACA AAGGCGCTCG TTCGCTCCCT GGCAGGACTA TCGATATCAT TTGCATTTGG GGTAGGAGCC ACTCCCTGGC TTTCCCTTGA TGTGGAAAGC ACGGTGACAG CGTCTCCTTC AGCAAGTGGT CAACCATTGG AAGCAACTGA GGTGCCCGAT AACGCGCTTG TCGAGCCGCT CTTGCCAGAA CCCACGCCTA TCAAAGAGGA GCGCGGCGCA GAGCCTGCCT TTTTCGCTGA TACCCCATCT TCCATCCCGC CCGCCAGTTC GCTTTCTCCG CTGAAGGATA TTGCCCCTGC CTGGTACCTT GCCATCAAGC CCAAACAAAC CAACGTCGCC GTACTTGCCG TCGATCTGAA AACCCAGCAG GTCATTATCA GCGATAACAG CGAACGCGCC ATGTTGCCTG CCAGTGTGCA AAAGTTGCTG CTGGCATTGG CGGCGCAGCA TACCCTCGGG CCGGATTTTC GCTTTCATAC CCAGCTTTTT GTTCAGGGGT TTAAACCTCC TGTGCTCGAG CGCCTCTATA TTGGCTTTAG CGGCGACCCA CTGCTCACCA GCGCCGAGCT CAGCGCCCTG CTTGGTAGCC TTAAACAGCA AGGCGTACGC ACCATTAATC AGGTTTATCT GGTTTCTGCC GTCGATAAGA GCGATAAGGC ACCCGGATGG GTTTGGGACG ACCTGGGGGT TTGCTACGCC TCACCCGTTG CCGAGTTCAG TCTCGATAAA AATTGCGTTA AGGCATCATT GCGACCAACC GAAAAAGGTG ATGGCACCTA CGTGAGATTG GCAAAAGATG CAGCAATATC CATTGAAAAT CAGCTGAACT ATCGACCTGG GGCCAGCTTC AAAGAATGCA GCCCTCACCT GTCGGTTGTG GGACCTAACC GCTACCTGCT CCATGGCTGC TACAGCGGCA AACAAGCCCT TCCCTTATCC ATTGCAGTGA CAGACACAGA TGCGTGGTTA CAGGAAAAGG TTGCAGGCCT TTTGAAAGCT GCCGGATTCA ACTCCCACAC ACCCAAGCGT TTACATACGT TGCCTGCCAA TGCCCACCTG ATTGCTGACC ATCAGTCGGC GACCATGGAC TCCTTGCTGA GTGAAATGCT CAAAGAGTCG GATAACCTGA TTGCCGATGC GCTCCTTAAG CAATTGGGTA AGCGCAAGGG GCAGGATGAG TCAGACTTCT ATCAGGGCAG TAAGGAAATG GCAGCCAATT TGACCTTGCT CGGCGTTGAC CTGTCCAGCG CCAATCTGGT TGATGGCTCT GGCTTATCAC GCTACAACCT GCTTAATGCC CGCCAATTAA TGCAAACACT TCTGTTGATC CATCACACAG AAGCATACGC CTCCCTCAAA GATGGGCTAC CAGTGTCAGG AAAAGACGGC ACGCTGCTTT ACAAACGCGG TTTCAATTCG CTGCCGTTAA AAGACCGGGT TCAGGCTAAA ACCGGCAGTA TGCAAGGTGT GTCAAACCTG GCGGGCTTTT TACGCAGTGG TGATAGGGAA TACGCTTTTG TGGTACTTGA GAACGGGTTG GTAGAGCCTG AAAGCCAAAA CGGCAAACGT AAACCGGGAT TTGCCGCCAC CTTACTTAAA GCCCTGTTAC AGCACGAACC ACAGATCATG TCGGCACAAA AATGA
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Protein sequence | MKGLQATKMT KALVRSLAGL SISFAFGVGA TPWLSLDVES TVTASPSASG QPLEATEVPD NALVEPLLPE PTPIKEERGA EPAFFADTPS SIPPASSLSP LKDIAPAWYL AIKPKQTNVA VLAVDLKTQQ VIISDNSERA MLPASVQKLL LALAAQHTLG PDFRFHTQLF VQGFKPPVLE RLYIGFSGDP LLTSAELSAL LGSLKQQGVR TINQVYLVSA VDKSDKAPGW VWDDLGVCYA SPVAEFSLDK NCVKASLRPT EKGDGTYVRL AKDAAISIEN QLNYRPGASF KECSPHLSVV GPNRYLLHGC YSGKQALPLS IAVTDTDAWL QEKVAGLLKA AGFNSHTPKR LHTLPANAHL IADHQSATMD SLLSEMLKES DNLIADALLK QLGKRKGQDE SDFYQGSKEM AANLTLLGVD LSSANLVDGS GLSRYNLLNA RQLMQTLLLI HHTEAYASLK DGLPVSGKDG TLLYKRGFNS LPLKDRVQAK TGSMQGVSNL AGFLRSGDRE YAFVVLENGL VEPESQNGKR KPGFAATLLK ALLQHEPQIM SAQK
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