Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1679 |
Symbol | |
ID | 4603930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2053436 |
End bp | 2054572 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639781042 |
Product | hydrogen:quinone oxidoreductase |
Protein accession | YP_927555 |
Protein GI | 119774815 |
COG category | [C] Energy production and conversion |
COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.915972 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACAC ATGCAGCCCT CTACGAGCAA GGAAAGCAGC GACTTGAAAC GCTGCGTTCC CTGCCAAGGC GCCATGAGGA GACCATCTTT GACAAGATGG CTCAACATGG CATTACCCGT CGTGATTTTA TGAAGTGGAG CGCCTCGGTT ACCGCCATGC TGGCGCTGCC GTTGCCCTTC TCTACCCTGG TGGCCGAAGC GGCCGAACTG GCAGACCGCG TGCCACTGAT TTGGCTGCAC ATGGCCGAAT GTACCGGCTG CTCTGAGTCG CTGGTACGCG CCGACACGCC AAATCTCGAC TCCCTAATCT TCGACCATAT CAGCCTCGAA TACCACGAGA CTCTGATGGC CGCTGCCGGT TGGCAAGCCG AGGAAAACCT CGAACACGCC CTGGAAACCT ACAAAGGCAA TTATCTGCTG GCAGTGGAAG GCGCCGTCCC CACCGCCAAT AACGGTGCTT TCCTGACCGT GGGTTGTAAA GGTCACACCG GGCTTGAAAT CATCAAGCAT GCGGCCGATG GCGCGGCAGC CATTGTATCC GTGGGTACCT GCGCCTCCTT CGGCGGCGTT CAGGCTGCCT ACCCCAACCC CACCGGGGCC AAAGGGGTAC ACGAAGTTGT CAGCAAGCCT GTGATTAACC TGGGCGGCTG TCCACCGAGT GAGAAAAATA TTGTTGGCAC CCTGATGTAT TTCATCATGT TCGGCAAGCT GCCGGCACTG GATATGTTTA ATCGTCCCAA GTGGGCCTAT GGCGCCCGGG TACACGATAA CTGTGAACGT CGTGGCCGCT TTGATGCCGG TGAGTTTGTT GAAGAGTTTG GCGATCACGG CGCCAAAGAA GGCTACTGCC TCTACAAGGT TGGCTGTAAA GGCCCTTACA CCTACAACAA CTGCCCCACA GAACGCTTCA ATCATCATAC CAGCTGGCCG GTACTCGCGG GCCACGGCTG TATGGGCTGC TCTGAGCCAA ACTTCTGGGA CGACATGGCC GACTTTGAGA AGCCACTTGG CCGGCAACTG CTGCACGGGC TTGATGCCAC GGCCGACACC ATAGGCGCCG TCATTCTCGG TGCCACTGTT GTCGGTATCG GCGCCCATGC CGTTGCCAGT GTATTTGCGC AAGCCAAAGA GGACTAA
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Protein sequence | MDTHAALYEQ GKQRLETLRS LPRRHEETIF DKMAQHGITR RDFMKWSASV TAMLALPLPF STLVAEAAEL ADRVPLIWLH MAECTGCSES LVRADTPNLD SLIFDHISLE YHETLMAAAG WQAEENLEHA LETYKGNYLL AVEGAVPTAN NGAFLTVGCK GHTGLEIIKH AADGAAAIVS VGTCASFGGV QAAYPNPTGA KGVHEVVSKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDHGAKE GYCLYKVGCK GPYTYNNCPT ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGLDATADT IGAVILGATV VGIGAHAVAS VFAQAKED
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