| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1660 |
|---|
| Symbol | |
|---|
| ID | 4603911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2028170 |
|---|
| End bp | 2030221 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639781023 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_927536 |
|---|
| Protein GI | 119774796 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.500771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAAC TCACATTAAG CGCGCAGGGC GCTGCCATCC ACAGTCGCGT CGCCCGGCGC
CTGTGCCTGA CGGTGTTTAT CGGCTTAAGT GCGGCCACAT CCACTGCCGC CCTCTGTGTG
CCCATGCAGG GGCACGAAAA CGCCTTAAAC AGCAATACAC TCAATCCCCT CAGCCTCAGT
CAGGCGCCGC ATTCCGGCCA TGGGGTTACG TCAAGCTCAG TGAAAGTCGA GCAAGTGAAG
GTCGAGCCCC TGAACTGGTG GGTTGGGATG GAAAACCCTC AGCTTGAATT GATGATCACA
GGTGAAGGAG TCGCACACAG TACCCTGAGG CTTGAAAATG CCCTTGGCGC AAAACTGCTG
GAGATCATTC CCGGCGACAG CCCCAACTAC CTGTTTGTGA AGCTCGACCT CTCGACCGCC
AGTACCGGCA TCCTCACTCT GGTGCTAAGC CGCCCCGCAA GCACAATCAA TCCGGCAACT
GACCTGACAA TCCCATACGA GCTTAAAGCA AGAGCCCCCG GTAGCAAGGA ACGTCAGGGG
TACGGCAACA GGGACGTGAT GTATCTCATC ACCCCCGACC GTTTTGCCAA TGGCGATAAA
GCGAATGACA ATCTGCCCGG TTTTGACGAC AAGCCCAGTA ACCCGGTCTA CAGCGAACCT
GGCAACAGTC GCGACAACGC CCGCCACGGT GGCGATCTGG CCGGTATTGA GCACAGGCTC
GATTATCTTA ACGACCTTGG AGTGACCCAG CTTTGGCTAA ATCCACTGCT GGAAAATCGT
CAGCCGGCCT ATTCCTATCA TGGCTACGCC ATCACAGATT TTTATCAAAT CGATGCCCGC
TTCGGCAGCA ATGCGCAATA TCAGGCATTG GTCAGAAAAG CAGCCGATAG AGGCCTTGGC
GTCATCATGG ATGTAGTACT CAATCACATG GGTTCGGGAC ATCCCTGGAT GCAGGATCTG
CCGTTTAATG ACTGGGTCAA TCCCCGGTCA ATGCACACCA GCCACAGACG CACGGCGGTT
CAGGACCCTT ACGCCGCGCC CAAAGATGCG GCCGCCTTTA CCGACGGCTG GTTTGTGGAC
AGCATGCCGG ACCTCAATCA GCGTAATCCC CACCTTGCCA CTTACCTGAT TCAAAATAAC
CTTTGGTGGA TTGAATACGC GGGGCTGTCG GGTCTGAGAA TCGACACCTG GTCTTACTCA
GATAAGCACT TCCTCAAGGC GTTTTCCGAG GCCATCATGG CGGAATATCC CCATTTCAAC
ATGGTGGGGG AAGAATGGAG CGGCAATCCT GCGGTAGTGT CGTATTGGCA GCGGGCAAAG
CAAAATCCCG ATGGATATCA AACGTCTCTG CCGGGACTGA TGGACTTTCC CCTCTATGAA
GTCTTATTGC AGGCAGTCAA TGAGGAAGAG CGCTGGGGCA CAGGCCTTAT CCGCCTCTAT
GAGGCCCTTG CCAACGATAT GCTCTATCCC CATGCCCAAA ATCTGGTGCT GTTTGAAGGC
AACCACGACA CCAACCGCCT CTACAGCCTG CTTGGGCGCG ATATGAACAA GTTCAAGCTC
GCGCTTGCCT ACGTGCTCTT GTCAAACCGG GTGCCGCAGA TTTTCTATGG CACTGAATTT
GCCATGCAAA GTCCTGTTGA GGGGCGCAAC GACGGCGCCG TGCGGGCGGA TATGCCCGGC
TTCGGCAAGG CCGGATTCAG TAAGTCAGAC ATAGATGCCA TGGCGGGCGA CTCAAAAACG
GCCTTTGAGT TTATCCGTGC ATTGCTGCAT TTTCGTAAAA CCAGTGATGC GGTGCACAGG
GGCAAACTGG TTCATTTTGT GCCACAAAGT GGCCTTTATG TGCAGCTGAG ACAAGCACCA
GATGATAACC CTGACGCCAA AAATCTGATG GTTATCTTTA ATAAAAACAA AGATTCTGTG
AGTCTGGATA TGGGGCACTT CACCGATTTC CTGCCCCTGA ACACGGACGT AAAGAGTGTG
CTCGATAACA GGCATTTTTC ATTACCGGCC ACACTCACTG TGTCATCCCC CGTTACCCTG
CTGGAGTTTT AA
|
|---|
| Protein sequence | MEQLTLSAQG AAIHSRVARR LCLTVFIGLS AATSTAALCV PMQGHENALN SNTLNPLSLS
QAPHSGHGVT SSSVKVEQVK VEPLNWWVGM ENPQLELMIT GEGVAHSTLR LENALGAKLL
EIIPGDSPNY LFVKLDLSTA STGILTLVLS RPASTINPAT DLTIPYELKA RAPGSKERQG
YGNRDVMYLI TPDRFANGDK ANDNLPGFDD KPSNPVYSEP GNSRDNARHG GDLAGIEHRL
DYLNDLGVTQ LWLNPLLENR QPAYSYHGYA ITDFYQIDAR FGSNAQYQAL VRKAADRGLG
VIMDVVLNHM GSGHPWMQDL PFNDWVNPRS MHTSHRRTAV QDPYAAPKDA AAFTDGWFVD
SMPDLNQRNP HLATYLIQNN LWWIEYAGLS GLRIDTWSYS DKHFLKAFSE AIMAEYPHFN
MVGEEWSGNP AVVSYWQRAK QNPDGYQTSL PGLMDFPLYE VLLQAVNEEE RWGTGLIRLY
EALANDMLYP HAQNLVLFEG NHDTNRLYSL LGRDMNKFKL ALAYVLLSNR VPQIFYGTEF
AMQSPVEGRN DGAVRADMPG FGKAGFSKSD IDAMAGDSKT AFEFIRALLH FRKTSDAVHR
GKLVHFVPQS GLYVQLRQAP DDNPDAKNLM VIFNKNKDSV SLDMGHFTDF LPLNTDVKSV
LDNRHFSLPA TLTVSSPVTL LEF
|
|---|
| |