Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1655 |
Symbol | |
ID | 4603906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2019731 |
End bp | 2020831 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639781018 |
Product | LacI family transcription regulator |
Protein accession | YP_927531 |
Protein GI | 119774791 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.677065 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTTGC CGCTCTGTGT CGGGGCGGTG GCCAGTGGCC CGAGCAAATA TAACAAGAGT CCTGTTATGG CGAGTAAAGC GACCTCTATC GATATTGCCT ATCGGGCGGG TGTGTCCCAG TCCACTGTGT CCCGCGCCCT GAGGGACAGC CCCTTGGTGA GTCCGGAAAC CAAGGAAAAA ATCCGTGCCA TTGCCCGCGA GCTTAACTAC AAGGTAGATA AAAACGCCAG TAATCTGCGT ACCCAAAACA GCCATACCCT GGCATTGCTG CTGTGTGAAG ATCCCACCAA CGACGACTCC CTGATTAATC CTTTCTTTTT GTCGATGCTG GGCTCTATTA CCCGGGCTAC TGCAAAACAG GGCTACGATT TGTTGGTGTC TTTTCAGCAG CTTTCCAGCG ATTGGCACGC CGACTATGAA GACAGCAACA AAGCAGACGG TATTATTCTG CTTGGCTACG GTGACTTTGT GGACTATGAG CACAAGCTGG AGCGCTTGCT GGCCCAAAAT ACTCACTTTG TGATTTGGGG TGCTGAGCAC AACAAGTCGA CGGTGGCTTC TGTGGGCTGT GATAATCAGC AGGGCGGCTT AATAGCCACC GAACACCTAC TTTCCCTTGG TCGCAAATCC GTGGCATTTT TGGGGGATGC CTCAAGCCAC AGCCCTGAGT TTCGCGACCG CTACCTTGGC CATGTCAGGG CGCTTAAAGA TGCGGGCCTT GTGGCCGATA AGCGCTGCCA GGTGGATGCC ATCAGCACTG AAAGTGCCGG CTTTGATGCG GCCAACAAGC TTATTCGCAA GGGTGCCCAG TTTGATGCCA TCTTTGCCGC CAGTGATTTG ATTGCCATCG GGGCCATCAG GGCCCTGAAA GAAGCCGGGC TCAGGGTGCC CGAAGACGTG GCTGTGGTGG GCTACGATGA TATTCCGGTG GCGAGCTTTG CCAATCCGCC ACTGACTACC ATCAAGCAAA ACACCCAACT TGCCGGTGAA ATGTTGGTGG AAAGCCTGCT CAAACTCATT CACGGCGAGG CTGTGCCACC ACGGTTAATC CCGACCAGCC TGGTGGTGAG GAAATCCTGT GGCATTGACC TTGGCGATTA A
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Protein sequence | MSLPLCVGAV ASGPSKYNKS PVMASKATSI DIAYRAGVSQ STVSRALRDS PLVSPETKEK IRAIARELNY KVDKNASNLR TQNSHTLALL LCEDPTNDDS LINPFFLSML GSITRATAKQ GYDLLVSFQQ LSSDWHADYE DSNKADGIIL LGYGDFVDYE HKLERLLAQN THFVIWGAEH NKSTVASVGC DNQQGGLIAT EHLLSLGRKS VAFLGDASSH SPEFRDRYLG HVRALKDAGL VADKRCQVDA ISTESAGFDA ANKLIRKGAQ FDAIFAASDL IAIGAIRALK EAGLRVPEDV AVVGYDDIPV ASFANPPLTT IKQNTQLAGE MLVESLLKLI HGEAVPPRLI PTSLVVRKSC GIDLGD
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