| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1628 |
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| Symbol | argD |
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| ID | 4603880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1992953 |
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| End bp | 1994170 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780992 |
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| Product | bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein |
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| Protein accession | YP_927505 |
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| Protein GI | 119774765 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
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| TIGRFAM ID | [TIGR00707] acetylornithine and succinylornithine aminotransferases
[TIGR03246] succinylornithine transaminase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.325985 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATATCA ACAGAAGTTT ATTCGATGAA GTGATGGTTC CCAACTACGC GCCATCCCCT
ATCATTCCGG TAAAGGGCCT GGGGTCACGC CTGTGGGATC AGCAAGGCCG CGAGTTTATC
GATTTCGCCG GTGGCATTGC CGTGAACTGT CTGGGCCATT GTCACCCAGC CCTGGTGTCT
GCCCTCACCG AGCAGGCACA AAAACTGTGG CACCTGTCCA ACACCATGAC CAACGAGCCA
GCGCTGATGC TGGCCAAACA CTTGGTTGAT AACACCTTTG CCGAGAAGGT CTACTTTGCC
AACTCAGGCG CCGAAGCCAA CGAGGCTGCC CTGAAGCTGG TTCGCCGCGT GGCATTGAAC
AAGTTTGGCG CTGATAAGTC ACAGATCATC GCCTTCAAAC AAGGCTTCCA TGGCCGCACC
CTGTTTACCG TATCCGTGGG TGGCCAGCCT GCCTACTCCG ATGGTTTTGG CCCCAAGCCA
GCCGATATCG ACCATGCCGA ATACAACAAT CTCGACAGCC TGAAGGCGCT GATTTCAGAT
CGTACCTGCG CCGTGGTACT GGAGCCGCTG CAGGGCGAAG GCGGCATCAT CAACCCAACC
CCTGAGTTCA TCAAGGGCGT ACGTGAGCTG TGTGACCAGC ACAATGCACT GCTGGTATTC
GATGAAGTAC AAACCGGCGT CGGCCGCACC GGCGAGCTTT ATGCCTATAT GGGCCTGGGC
GTTACCCCGG ATGTACTGAC CACAGCCAAG GCCCTTGGCG GTGGTTTCCC CATTGGCGCC
ATGTTGACCA CCACTGAACT GGCAAAGCAT CTGGTTGTAG GCACCCACGG CAGCACCTAC
GGCGGTAACC CGCTGGCCTG TGCCGTTGGC CTTGCCGCAT TCACCACAGT AAATACCCCG
GAAGTACTGA ATGGCGTGAA AGAGCGCGAA CAGCTGTTCC GTGATGGCCT CAATGCCATC
AACGACAAGT ATCAGGTATT CACCGAAGTG CGTGGTAAGG GTCTGCTGCT GGGCGCTGCG
CTTAATGCGG ATTACGCCGG TAAAGCCCGT GACTTTATGC TGGCCGCCGC TGAAGAAGGC
GTGCTCCTGC TGATGGCCGG TCAAAACGTG GTGCGTTTTG CCCCTTCTCT TATCATTCCT
GAGGCAGACG TTCGGGAAGG CCTGGCGCGT TTCGACGCCG CCATCGCCAA ATTGGTTGCC
AGGCTTAACG CCGGTTAA
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| Protein sequence | MHINRSLFDE VMVPNYAPSP IIPVKGLGSR LWDQQGREFI DFAGGIAVNC LGHCHPALVS
ALTEQAQKLW HLSNTMTNEP ALMLAKHLVD NTFAEKVYFA NSGAEANEAA LKLVRRVALN
KFGADKSQII AFKQGFHGRT LFTVSVGGQP AYSDGFGPKP ADIDHAEYNN LDSLKALISD
RTCAVVLEPL QGEGGIINPT PEFIKGVREL CDQHNALLVF DEVQTGVGRT GELYAYMGLG
VTPDVLTTAK ALGGGFPIGA MLTTTELAKH LVVGTHGSTY GGNPLACAVG LAAFTTVNTP
EVLNGVKERE QLFRDGLNAI NDKYQVFTEV RGKGLLLGAA LNADYAGKAR DFMLAAAEEG
VLLLMAGQNV VRFAPSLIIP EADVREGLAR FDAAIAKLVA RLNAG
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