| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1602 |
|---|
| Symbol | |
|---|
| ID | 4603854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1957061 |
|---|
| End bp | 1958977 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639780961 |
|---|
| Product | ABC transporter ATPase component |
|---|
| Protein accession | YP_927479 |
|---|
| Protein GI | 119774739 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.52947 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCTTG TTCGTATCAC CAATGGCTCT TTGGCCTATG GCTATGTTCC TTTATTGAAA
AACGCCGATC TCAGCATCGA AGCCGGCGAG CGAGTGTGTA TTGTGGGCCG TAACGGTGCC
GGTAAGTCCA GCCTGCTCAA AATTCTGGAT GGCGAAGTTC ATCTGGACGA CGGCGAGCTG
AACCTGGCAA CAGACGTGCG TATCAGCCGC TTGCAGCAAG ACCCACCAAA GGCGGAATCG
GGCAGTGTTT ACAGCTACAT CTCCCAGGGC CTGAAAGAAG CCGGCGAAGT GCTTGAGCGC
TACCATCAGC TGTCCCACGA CCTGGCCACC GCCGATGATA CAATGCAAGC GCGCATGCTC
AAGGAAATGG AAACATTGCA GGCAAAGCTT GACCATTTGA ATGGCTGGCA ACTGGATACC
CGAATTCAGG CCCACTGTGT ACGCCTTGGT CTGGACCCCG ATAAGCCGCT CAGCGAACTT
TCCGGCGGTT GGCAGCGAAA AGTCGCCCTG GCCAGAGCGC TGGTGAGCGA GCCTGAGCTG
TTGCTGCTCG ATGAGCCAAC CAACCATTTG GATATCGACA CCATCGAGTG GCTCGAGCAG
TTTTTGCTGA GCTACAAGGG GGCCATCGTC TTTATCAGTC ACGACCGTGG CTTTATCAAT
CGCATGGCGA CCCGAATACT GGATTTGGAC CGTGGCGTCG TCACATCCTG GCCCGGCACC
TATCAGGCGT ATCTGGAAGG CAAGGCCGAA TGGCTCAGAC ACGAAGCTGA AGCCAACGCC
CAGTTTGATA AAAAACTGGC AGAGGAGGAA GTGTGGATAC GTCAGGGTAT TAAGGCGCGG
CGCACCCGTA ACGAAGGCAG GGTGAGGGCA CTTAAGGCGC TGCGTATGGA GCGCTCAGAG
CGGCTCAATC GCCAGGGGAA CGTTCGCATG AACGTGGCCG AGGGCGAACG CAGTGGCAAG
CTGGTATTTG ATGTAAGCGA GCTGAATTAC AACCTGGCGG ACAAAGATCT GGTGCGGGAT
TTTTCGGTGA GCGTGATGCG CGGCGACCGA ATTGCACTGA TAGGTCCCAA TGGCTGCGGC
AAGTCGACTC TCATTAAGCT GCTGATAGGC CAACTCGAGC CTCAGTCCGG TAACATCAAA
ACCGGTACCA AACTGGAAGT TGCGTATTTT GACCAATACC GCGAAAACCT CGACGAAGAG
AAAACCGTTG AAGAAAACGT GGGGGATGGC AAGCAGACGG TAACCGTCAA TGGCCGCGAT
CGCCATATAC TGAGCTACCT GCAGGACTTT TTGTTTTCAC CAGCACGGGC CCGCACTCCG
GTAAAAGCCC TCTCCGGTGG TGAGAAAAAC CGTCTGCTGC TGGCCAGGCT GCTGCTGCGT
CCTGCCAACC TTATCATTCT CGATGAGCCC ACCAACGACC TGGACATCGA AACCCTGGAG
CTGCTCGAGT CCATGTTGAC CGAATACGAT GGCACCCTGC TTATCGTGAG CCATGACAGG
GCCTTTATCG ACAATACCGT CACCAGTAGC TGGTGGTTTA CCGGCAATGG CCGCTGGGCC
GAATATGTGG GCGGTTATCA GGATGCTGTT GACCAGGGTG CACGATTCTA TACCGGAGCG
GCGGAACCTG AAGGGCAAAA GAGTGTCCAA GCTCAGGCGC CTGTGGTAAA ACAGCAAGCT
GATGTAAAAA CACAAAAGAA ACTCTCTTAT AAGTTGCAGC GGGAGCTGGA CAGCCTGCCT
GAACTGATGG AAGCCCTTGA GGCCGAGATT GCGGCACTGC AACAGGAAGT GAATCAGCCG
GAGTTTTATG CTCAGGCACA GGATACGGTT AACGCGCGGC TGGCATTGCT GGGCGAAAAA
GAACAGCAAT TGGACGTTTA CTTCGAGCGT TGGGAAGAAC TCGAGTCAAT GAAGTAA
|
|---|
| Protein sequence | MSLVRITNGS LAYGYVPLLK NADLSIEAGE RVCIVGRNGA GKSSLLKILD GEVHLDDGEL
NLATDVRISR LQQDPPKAES GSVYSYISQG LKEAGEVLER YHQLSHDLAT ADDTMQARML
KEMETLQAKL DHLNGWQLDT RIQAHCVRLG LDPDKPLSEL SGGWQRKVAL ARALVSEPEL
LLLDEPTNHL DIDTIEWLEQ FLLSYKGAIV FISHDRGFIN RMATRILDLD RGVVTSWPGT
YQAYLEGKAE WLRHEAEANA QFDKKLAEEE VWIRQGIKAR RTRNEGRVRA LKALRMERSE
RLNRQGNVRM NVAEGERSGK LVFDVSELNY NLADKDLVRD FSVSVMRGDR IALIGPNGCG
KSTLIKLLIG QLEPQSGNIK TGTKLEVAYF DQYRENLDEE KTVEENVGDG KQTVTVNGRD
RHILSYLQDF LFSPARARTP VKALSGGEKN RLLLARLLLR PANLIILDEP TNDLDIETLE
LLESMLTEYD GTLLIVSHDR AFIDNTVTSS WWFTGNGRWA EYVGGYQDAV DQGARFYTGA
AEPEGQKSVQ AQAPVVKQQA DVKTQKKLSY KLQRELDSLP ELMEALEAEI AALQQEVNQP
EFYAQAQDTV NARLALLGEK EQQLDVYFER WEELESMK
|
|---|
| |