Gene Sama_1588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1588 
Symbol 
ID4603840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1933533 
End bp1935608 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content51% 
IMG OID639780944 
Producthypothetical protein 
Protein accessionYP_927465 
Protein GI119774725 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000609017 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTG TTAAAAAGGG TTTTAACAAG ACGGCGCTTT CTTTGGGGGT TGCGTCAGCC 
CTGAGTCTGG GAAGTATTCC TGCTCAGGCG GTATCGTTCG ATTGGGGCGA AGTGCAAGGG
TCTTTCGACT CGACCTTCAC TCTTGGTGCC AGTTGGCGCG TGGAAAAACG CGACTGGGAC
GGCCAAATCG GTAAGGTAAA TCACCCCAGA TTTGATTGGT CCAACTATTC TGCATTTGGC
AACACCAAGT ACACCTCGGC GGAAATCTGG GCTCAACCCG GTTCATACTC AAGTAACAAC
GACTTGAGCA ACTTACTCTA TTCCCAGGGC GACACCACGT CTGAAATTTT CAAAGGTTTG
CATGAACTGT CGCTGAAATA CGAAAACTTC GGTCTTTTCG CCCGTGGCAT GTATTTCTAT
GACCGTAAGC TAAACGACGG TGACTTCGGT TTTTCTGATC CCATCACAGG TAAAGAGTTC
GATCCCTGTG CAGACAAACG CGCGAAGGAA TTGCAGTGTA AGGACATCCG TCTGCTGGAT
GCCTTTGTTT ATGCCAACTT TGACTTTAAT GATGGCCAGA ATCCGCTGAC TGTTCGCGTC
GGTAATCAGG TGGTCTCATG GGGCGAAAGT ACGCTGATTG CCCACGGCAT AGGTGTAATT
AACCCGGTTG ACCTGAACAT CCTTAATGCA CCCGGTGCGG AGCTCAAAGA GGCTTTCCGT
CCACAGGGTA TGGTGTGGGC GTCTCTGGGT GTGACAGAAA ATCTCAGTCT GGAAGCCTTT
TATCAGTATG ACTGGCAGCC CATTTGGGTT CCAACACCGG GTTCGATTTT TGCCACCAAC
GACTTTGCCG GTTATGGCGG TTATCAGCAA AACGCCCAGC TTGGTTTTAA CGCCAACCCG
GATATCAATC TGGACTTCAT TCAGGCCGAG TATGAAAAAC TGGCACAAAT GATTGTAGCC
GGCGCCTTTT CATCTCCAGA AGGCACACAA AGTCTCATCC GTGCTGCACT GGCCTATCCA
ACCAAGGTAA CCCTGATTCA GGACGAAGCC GAGGCGAGCG ATGATGGTCA ATATGGTATT
AAGCTTGGGT ACTACGCCCC TGAGCTGGGT GAAACCGAGT TTGGTCTTTA CTATATGAAC
TACCACAGTC GTCGTCCGCT TATCAGCGGC ACTGCGGCGA ACTTCGACTT GGTTCCTCTG
CTTACTGACA TGACCACTGT TGGCATGAAT GCCGGTAATA TCGATCGCAA CCTCATCCTC
GGACTCGAAA GTTTCTCCAA GGCTCAGATT GTGTATCCGG AAGACATCCA GCTCTACGGT
TTCAGCTTTA ACACCCTGAT TGGCGATACC TCGGTTGCCG GTGAAATTGC TCACCGTCAG
GACGAGCCGC TGCAGATCGA CGACGTGGAA CTCCTGTTTG CCGCGATGCC GCAGCAGCTG
GCGAATTCCA ATGTGGTCGG CGGTGATTAC AGCTACCTCG ATGGTCTGTC TCAGTACACC
TCTTACTTCA ATAAAGATGT GAATCCAGGT GATTATGCCG AAGGCTTTAT CCGAGTGGAT
ACCACTCAGG CCCAGTTCAC CCTGACACAC CTCTTTGGCC CAACTCTGGG GACTGACAAC
CTGACCATGC TTGCGGAAGT GGGTGGCATC TGGATCCACG ACATGCCATC ACCTGACGAG
CTTCGTCTCA ATGGTCCTGG CACTGCCCGC AGCGGCGGTA AAGAAGGGTA CGAAGCCATT
ATTCAGGTGC TGCACAATGG CCCTGAAACC AACCCATTCC CAACAGATTT TGCCTGGGGT
TACCGTATTG TGGCCAAGGC CGACTACAAC AACCTGTTTG CCGGTATCAA CGTGTCGCCA
CGGGTTATCT GGTCACACGA TGTTGACGGT ATCACGCCAG ATCCCCTGTT CCTGTTCACC
GAGGGACGCA AGTCAGTGGC CGTGGGTATC AACTTTGACT ACCAGAGCCG TTGGGGCGCC
GATCTGTCTT ACAACAGCTT CTTCGGTGGT GTAGGTACCA CCAACGCCAT GAGCGATCGC
GATTATGTGT CGTTCAATAT CAAGTATTCT ATCTAA
 
Protein sequence
MKSVKKGFNK TALSLGVASA LSLGSIPAQA VSFDWGEVQG SFDSTFTLGA SWRVEKRDWD 
GQIGKVNHPR FDWSNYSAFG NTKYTSAEIW AQPGSYSSNN DLSNLLYSQG DTTSEIFKGL
HELSLKYENF GLFARGMYFY DRKLNDGDFG FSDPITGKEF DPCADKRAKE LQCKDIRLLD
AFVYANFDFN DGQNPLTVRV GNQVVSWGES TLIAHGIGVI NPVDLNILNA PGAELKEAFR
PQGMVWASLG VTENLSLEAF YQYDWQPIWV PTPGSIFATN DFAGYGGYQQ NAQLGFNANP
DINLDFIQAE YEKLAQMIVA GAFSSPEGTQ SLIRAALAYP TKVTLIQDEA EASDDGQYGI
KLGYYAPELG ETEFGLYYMN YHSRRPLISG TAANFDLVPL LTDMTTVGMN AGNIDRNLIL
GLESFSKAQI VYPEDIQLYG FSFNTLIGDT SVAGEIAHRQ DEPLQIDDVE LLFAAMPQQL
ANSNVVGGDY SYLDGLSQYT SYFNKDVNPG DYAEGFIRVD TTQAQFTLTH LFGPTLGTDN
LTMLAEVGGI WIHDMPSPDE LRLNGPGTAR SGGKEGYEAI IQVLHNGPET NPFPTDFAWG
YRIVAKADYN NLFAGINVSP RVIWSHDVDG ITPDPLFLFT EGRKSVAVGI NFDYQSRWGA
DLSYNSFFGG VGTTNAMSDR DYVSFNIKYS I