Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1404 |
Symbol | |
ID | 4603656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1704037 |
End bp | 1706616 |
Gene Length | 2580 bp |
Protein Length | 859 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780754 |
Product | beta-glucosidase |
Protein accession | YP_927281 |
Protein GI | 119774541 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0412304 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0264446 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTG CACTATCCAA AACTACGCTG GCCCTTGCCT GTGTCCTTGG TGGCGTCATG TCAGGCAAGG TGAGCGCAGC AGAATCCTCA TCGCTGACCG AGCGGGATGT TAATCGCTGG CCAGAGGCCG TTTACCATAC CCCAATTCAG GCGGATGTTG AGGCAAAGGT TCATAAGCTG CTGGCCGCAA TGACACTTGA GCAAAAAGTG GCGCAAATTA TCCAGCCGGA AATTCGCGAC TTTGGCGTTG AGGATATGCG TCGTTATGGC TTTGGCTCCT TCCTCAATGG TGGCGGTTCA TTCCCCGGTA ATAATAACAG GGCAAAGGCG GCCGATTGGG TGGCGCTGGC AGACCAGATG TACCACGCCG CCATGGATGA CAGTATCGAT GGAATTGCCA TTCCGCCCAT GTGGGGCACA GATGCCGTTC ACGGTCATGG CAATGTGTTT GGCGCCACCT TGTTCCCCCA TAACATTGGC TTGGGTGCAA CGCAAAACCC CCAGCTGATT AAAGCCATCG CGGCGGCCAC GGCCAAAGAA GTGCGCGCAA CCGGGATCGA CTGGGTGTTT GCGCCTACCG TTGCTCTGGT GGATAACCTG CGCTGGGGTC GAACTTATGA AGGCTATGCC CGGGATCCTG AGCTGATTGA ACGCTACGCC GAGGCCTTTG TCGATGGCAT GCAGGGCGAG GGCAAAAGTT GGCTGGGTGA CGATTACACC CTGGCCACTG CCAAACACTT TATCGGCGAT GGCGGCACTG ATAATGGTGA CGATCGCGGT GACACCAGGG TAGATGAAAA CACTCTGATA GCCCGCCATG GTCAGGGTTA CGTGGGTGCA CTGGGTCATG GCGTGCAAAC CGTGATGGCC TCTTTTAACA GTTGGAACGG CGAAAAGCTC CACGGCAGCA AATACCTGCT CACCGATGTG CTCAAAGAGC GCATGGGATT TGATGGGGTT GTGGTTGGCG ATTGGCTCGG CCATGGCTTT GTACCGGGCT GCAGTTACGA GCACTGCGCT GAAGCCGTGA ATGCCGGGGT GGACATACTG ATGGCCCCGG GGGACAGCTG GAAAGCACTG TACGCCAATA CCATCGCGGA TGTGAAATCC GGGGTCTTGC CGCTTTCCCG TCTTGATGAT GCGGTGAAGC GCGTGTTGCG GGTAAAGCTG CGTGCGGGTC TGTTTGATAA CAAGGCGCCG TCAGCGAACC CCTATGCCGG TAAACAGGAA TGGATAGGGC ATCCAGAGCA CCGCGCCATT GCCCGTCAGG CGGTTGCCGA GTCTTTGGTG CTGCTCAAAA ACAACCGCCC AGCCAATGGG GCGCGCCCTG TGCTGCCCAT TGCCGCCAAT GCCAGGGTCT TGGTGGTGGG CGAAGGCGCT GACAGCATTC CACAGCAGTC GGGTGGTTGG AGCATGACCT GGCAGGGGAC CGAAGTCACC AATGCGGACT TCCCCGGTGC CACCAGTATT TTTGCCGGCA TCAAGGCAGC GCTGAACGCC GCTGGCGGTG ATGCTCTCCT GAGCTCCGAT GGCACTATCC CCGTGGGATT CAAACCCGAT GTGGTGATAG CCGTCTATGG TGAGCAACCC TACGCCGAAG GCAACGGCGA TTTGGATAAC CTCGAGTATC AGCGCGGTGA CAAGCGTTCT CTGGCCATGC TCAGCGCACT GAAGGCAACC GGATTACCCC TGGTGTCCGT GGTTTTGTCC GGCAGACCCC TGTGGATGAA CCCTGAAATC AACGTATCGG ATGCCTTTGT GGCCGCCTGG CTGCCCGGCA GCGAAGGTGC GGGTGTGGCA GATGTGCTGA TTGGCGATAA AAACGCTCAG CCCCGAGCCG ATTTCAAGGG GCGCATGCCA TTCCCATGGC CCGCCACTCC ATCAGCCGAT GGTTTTGTGT CTGATACGGG CAGTGCAGGG CAAGACCAGC CCAAGCCCCT GTTCAGCCTC TGGCAGGGCT TTGATTATCG GTCTGATGCC ACGCTTGCCG CACTCAGCGA GGACAACGGC AGCTCGGAGG CAGACAACCG ACTGGCGATT TTCGATAAAG CCATCAAGGC GCCCTGGCAT TTGGCGGTAG GAGACGATAA GGGACTGCAC CGTGTTGGTC CCGGTCTTTG GCAGCAGGGT CCATGGGCCG TGCGCAGTGT GAATCGCATT GTGCAGGAAG ATGCCCGCCG GTTTGAGTTC GGCGCCGCCG GTACCCTCAG CTTCCGTGAT GATTTTACTT TGGACTTGCG CCGCTTTGCG CCCGACTCAT CACTGCTTTC TTTCGATATT GCCCTGACGG CCTTGCCCGG AAAGTTGCAA CTGTCGATGG TCTGTGAAGG CGGCTGTCGT CAAGCCGTGG AGTTGTCCGG GCAGTTAAAA GCCGATGGTC AGTGGCAGCG TGTTGAAGTG CCGCTGTCAT GTTTCGGAGT AACGGCTGAT GAGCTGGCAC GCACTTTCAG CCCCATGACC ATGTCACTTC CTCAGGGGGG CACCCTGACG CTGGCGAATG TCAGCCTCGA AGGAATGGTC CAACGGGATG CGTCTGCCAA GGCAGTGGAA TGTGGATTGC CGCCGGTCAG CGACAAATGA
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Protein sequence | MKFALSKTTL ALACVLGGVM SGKVSAAESS SLTERDVNRW PEAVYHTPIQ ADVEAKVHKL LAAMTLEQKV AQIIQPEIRD FGVEDMRRYG FGSFLNGGGS FPGNNNRAKA ADWVALADQM YHAAMDDSID GIAIPPMWGT DAVHGHGNVF GATLFPHNIG LGATQNPQLI KAIAAATAKE VRATGIDWVF APTVALVDNL RWGRTYEGYA RDPELIERYA EAFVDGMQGE GKSWLGDDYT LATAKHFIGD GGTDNGDDRG DTRVDENTLI ARHGQGYVGA LGHGVQTVMA SFNSWNGEKL HGSKYLLTDV LKERMGFDGV VVGDWLGHGF VPGCSYEHCA EAVNAGVDIL MAPGDSWKAL YANTIADVKS GVLPLSRLDD AVKRVLRVKL RAGLFDNKAP SANPYAGKQE WIGHPEHRAI ARQAVAESLV LLKNNRPANG ARPVLPIAAN ARVLVVGEGA DSIPQQSGGW SMTWQGTEVT NADFPGATSI FAGIKAALNA AGGDALLSSD GTIPVGFKPD VVIAVYGEQP YAEGNGDLDN LEYQRGDKRS LAMLSALKAT GLPLVSVVLS GRPLWMNPEI NVSDAFVAAW LPGSEGAGVA DVLIGDKNAQ PRADFKGRMP FPWPATPSAD GFVSDTGSAG QDQPKPLFSL WQGFDYRSDA TLAALSEDNG SSEADNRLAI FDKAIKAPWH LAVGDDKGLH RVGPGLWQQG PWAVRSVNRI VQEDARRFEF GAAGTLSFRD DFTLDLRRFA PDSSLLSFDI ALTALPGKLQ LSMVCEGGCR QAVELSGQLK ADGQWQRVEV PLSCFGVTAD ELARTFSPMT MSLPQGGTLT LANVSLEGMV QRDASAKAVE CGLPPVSDK
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