Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1403 |
Symbol | |
ID | 4603655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1702793 |
End bp | 1704040 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639780753 |
Product | glucose/galactose transporter |
Protein accession | YP_927280 |
Protein GI | 119774540 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000325262 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0455356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACTG TACCTATTGC CAACGCTAAT CACGCAGGCG CTGCCGGCGC AGAGAACTAT CGTTTTGCGC TCGGCTCACT CACCACATTG TTTTTTATGT GGGGTTTTAT CACCTGTCTT AACGACATCC TTATTCCGCA TCTGAAAGCC GTCTTCAGCC TGAACTATGC CCAGGCGATG TTAATTCAGT TTTGTTTCTT TGGTGCCTAT TTTCTGGTGT CGGTACCGGC TGGTGTCCTG GTCAAACGTC TCGGCTACCA AAAGGGCATA GTGGTTGGCT TGTTAACCGC AGCGCTGGGC TGTGGTCTCT TTTATCCGGC GGCGGTATCG GCCACGTATG GCGTGTTTTT GGGGGCACTC TTTGTGCTTG CCAGCGGCAT TACCGTGCTG CAGGTGGCGG CCAATCCCTA TGTGACGGCG CTGGGACCGG TGCAAACAGC CTCAAGCCGT CTGACCCTGA CCCAGGCGTT TAACTCCCTG GGTACCACCA TAGCCCCGGC CTTTGGCTCT GTGCTTATCC TGTCGGTGGC CGTTGGCGCC TCTGCCGAGG CCGAAGCCGA TGCGGTCAAG CTGCCCTATC TGCTGCTGTG TGGCATGTTG ATTGTGCTGG CGGTGGTGTT TGCACTGCTG AAATTGCCCC ATATCCATGA CCAGGAAGAT GAGGTGGCCG CGACTGGCCA GAGCGCGCTT GCCCATCGCC ATCTGGTGCT CGGCGCCATA GGCATATTCG TTTATGTGGG CGGTGAAGTG GCCATTGGCA GCTTTTTGGT GAACTTTTTG GGTGAATCCC ATGTGGCGGG CATGGCCGAG GCCGATGCAG CCCATTACAT CGCCTTTTAC TGGGGCGGTG CCATGGTGGG GCGTTTTATC GGTGCGGCCG TGATGCAAAA AGTGGATGCC GGCAAGGTGC TGGGATTCAA TGCCACCATG GCGGCCCTGC TGGTACTGGT TGCCATGAAC AGCAGCGGCG CCCTGGCCAT GTGGGCGATT CTGGCGGTGG GGCTGTTTAA CTCCATTATG TTTCCGACCA TCTTCAGTCT GGCGCTGAAA AACCTGGGCC CGGCGACAGC CCAGGGCTCG GGTATTCTGT GTCTGGCGAT TGTGGGTGGC GCCCTGGTGC CTTTGCTGCA GGGGCTTCTG GCTGATTCTG TTGGCTTGTC TGCCTCATTC ATTCTGCCGG TGCTCTGCTA CGGCTACATC CTCTTTTATG GCCTGAAGGG CTCTGTACCC CGGGAGGCTG GTCAATGA
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Protein sequence | MATVPIANAN HAGAAGAENY RFALGSLTTL FFMWGFITCL NDILIPHLKA VFSLNYAQAM LIQFCFFGAY FLVSVPAGVL VKRLGYQKGI VVGLLTAALG CGLFYPAAVS ATYGVFLGAL FVLASGITVL QVAANPYVTA LGPVQTASSR LTLTQAFNSL GTTIAPAFGS VLILSVAVGA SAEAEADAVK LPYLLLCGML IVLAVVFALL KLPHIHDQED EVAATGQSAL AHRHLVLGAI GIFVYVGGEV AIGSFLVNFL GESHVAGMAE ADAAHYIAFY WGGAMVGRFI GAAVMQKVDA GKVLGFNATM AALLVLVAMN SSGALAMWAI LAVGLFNSIM FPTIFSLALK NLGPATAQGS GILCLAIVGG ALVPLLQGLL ADSVGLSASF ILPVLCYGYI LFYGLKGSVP REAGQ
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