| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1372 |
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| Symbol | |
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| ID | 4603624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1663163 |
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| End bp | 1663987 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780722 |
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| Product | short chain dehydrogenase family protein |
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| Protein accession | YP_927249 |
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| Protein GI | 119774509 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0570365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATAC ATCCAAGTTT GAATCTTGTT CAGCATGGGC TTTCACCCTA TCATGGTAGC
CCTGTACTTT TGCTGAATAT CCTTATGACT CAAGCAACTG CAATAATTGT GGGCGCCAGC
TCACACCTTG GCCGTGAATT GGTGACTCAA CTCACACAGG AAGGCACCCG AGTGGGTGTT
CTGGTACCCG AGCCAGAACT GATGACAGAA TTTATCCAGT CCCTCGGGGG CAACGTTGAG
ATAGAAGCCC TACCCATCAC AGAGCCAGAA CGCGCCATAG CTGCCTTTGA AAACCTGTGG
CAGCGTATGG GCGGTGCCCA TCTGGTATTG GTCAATACAG GGCTCAACTC CTATCACCCG
GATCTGCCCT GGCAGATAGA CGCCGATATC ATCAAGGTTA ACGTGCAGGG CTTTGCGCTG
ATTTGCAATA CGGCGTTCAG ATTACTGCGC CTGCAAGGGT ACGGGCAACT GGCTGCCATC
AACTCCATCG CCGGTCAGCG AGGTGGCCCT GCCGTGGCTT ACCATGCGTC CAAAGCCTTT
GCGCAGAATT ATCTCGAAGG TTTATCGATG CATGCCCAGC GATTGAAACT CCCCATCACC
ATTACCGATC TGCAACTGGG ACTGCTGGAC AAAGCCGCCA TGCAGCAAAG CCGCTTTTGG
TTACAGCCAC TGCCCAAAGT CGCCACGCAG ATTTTACACG CACTGAAAAA AGGTAAGCGC
AGAGCCTACA TCACCCGTCG CTGGGCGTTA GTGGCCTGGC TGATACGTCT GCTGCCGGAA
TACATCTACA ACACCCGTCA CTGGAAGAAA AAGGGCAAAC ATTGA
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| Protein sequence | MSIHPSLNLV QHGLSPYHGS PVLLLNILMT QATAIIVGAS SHLGRELVTQ LTQEGTRVGV
LVPEPELMTE FIQSLGGNVE IEALPITEPE RAIAAFENLW QRMGGAHLVL VNTGLNSYHP
DLPWQIDADI IKVNVQGFAL ICNTAFRLLR LQGYGQLAAI NSIAGQRGGP AVAYHASKAF
AQNYLEGLSM HAQRLKLPIT ITDLQLGLLD KAAMQQSRFW LQPLPKVATQ ILHALKKGKR
RAYITRRWAL VAWLIRLLPE YIYNTRHWKK KGKH
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