| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1364 |
|---|
| Symbol | |
|---|
| ID | 4603616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1654188 |
|---|
| End bp | 1656122 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639780714 |
|---|
| Product | acyl-coenzyme A synthetase/AMP-(fatty) acid ligase |
|---|
| Protein accession | YP_927241 |
|---|
| Protein GI | 119774501 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.442954 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA TAAGCACAAG CACAAAGATG CCCGCGGATC CTGCTGAGGC GCTGCGCCAG
GAAGCCAGGG ATAACCCCGA GCAATACTGG CGAAAGGCTG CCGATATGGT GGACTGGCAC
AAGGCGCCAT CGACCATTCT GGATTCGTCA CAGGCGCCTT TATATCGCTG GTACACAGAC
GGCGAAATCA ATACCTGCTA TAACGCCCTC GACCGTCAGG TGGATGCCGG GCGTGGCAGT
CAGACGGCGT TTCATTACGT CAGTCCGGTA ACGGAAACCG AATATTCTAT CAGCTACACC
GAGTGTCTGG CCCAGGTGAA GCGCCTGGCT GGCCTGCTCA AGGCACAGGG TGTGAATAAG
GGTGACCGGG TAGTGATTTA CATGCCCATG GTGCCCGAGA CGGCTTATGC CATGCTCGCC
TGTGCCCGTA TCGGCGCGAT TCACTCTGTG GTGTTTGGCG GTTTTGCTGC CAATGAACTG
GCCAGTCGTA TCAATGATGC CAAACCAGTG ATGGTGCTTT CAGCTTCCTG TGGGGTTGAG
CCTTCGGGTG TGGTGGCCTA TAAGCCGCTG CTGGATGCGG CCCTGGCTCA GGCGAGCCAT
AAGGTCAGTA AATGTTTGAT CTTACAGCGC CCTCAATATG AGGCAGCGAT GACCCCCGGG
CGTGATCTTG ACTGGCAAGA GTCTGTGGCC AGCGCAGCCG ATGCCGATTG GGTGCCGGTC
AAGGCAACCG ACCCCCTGTA TGTGCTCTAT ACCTCTGGCA CCACCGGCCA ACCCAAGGGC
GTGGTGCGGG ACAACGGCGG CCACGCAGTG GCGCTGGCGT GGTCGATGCG CTACCTCTAC
GACATCGAAC CCGGTGATAC CTTCTGGGCC GCCTCAGACG TGGGCTGGGT GGTAGGACAC
TCTTACATCG TGTACGGCCC TCTGATTGCC GGTGCCACCT CTGTGCTCTA TGAAGGCAAA
CCCGTGGGCA CCCCGGATGC CGGTGCGTTC TGGCGCACCA TTAAAAAGTA TGGTGTAAAG
AGTTTCTTTA CCGCGCCCAC TGCCATTCGC GCCATCAAGC GTGAAGACCC TGAAGGCTTT
TTCTGCCGTA ACACCAACCT TGACTGCCTT AAGCAGATGT TCCTGGCCGG GGAGCGCTGC
GATCCCGATA CCCTGCTGTG GGCCCAGGAA ATGCTTGGCA AGCCTGTGAT TGACCACTGG
TGGCAAACTG AAACCGGTTG GCCTGTTGCC TCCAACTTGA TGGGGATTGC GCAAATGCCC
ATTAAGCCGG GCTCGCCCGC CCGGCCGGTG CCCGGATATC AAGTGGATGT GGTGGACGAG
GCCGGTAACA GCGTGGGCGC CGGTGAATAC GGCAACGTGG TTATTCGCCT GCCATTGCCA
CCGGGCACAC TGCCGACCCT GTGGCAAAAC GACAAACGCT ACATCGACAG TTACCTCTCC
ATGTACCCGG ATTGTTATCT CACCGGCGAT GCGGGTTACA TGGATGAAGA CGGCTACCTG
TACATCATGA GCCGTATCGA CGATGTCATT AACGTAGCAG GCCATCGTCT GTCCACGGGC
CGGTTTGAAG AGGTGCTCTG TCAGCATCCG GCAGTTGCCG AAGCGGCTGT GATTGGCGTG
GAGGACAAGC TCAAAGGTCA GGTGCCCCTT GGCTTGGTGG TACTCAAGAA CGGGGTAGAC
ATCACCGATG AACAGCTCAA TAAAGAGCTG GTTGCGCTGG TGCGAAGTGA AATTGGCCCC
GTTGCCGCCT TTAAGCTGGT CAGTGCCATT CCCAAGTTGC CCAAGACCCG CTCAGGTAAA
ATCCTGCGTG CCACCATGCG CAAGATTGCC GACAATCAGG AATACAGTGT ACCTGCCACC
ATTGAAGACC CGGCTACGCT GGAACTGGTG CGCAACACCC TGACCCGCAT GGGCTATGGT
GACGCCCGGG TCTGA
|
|---|
| Protein sequence | MTTISTSTKM PADPAEALRQ EARDNPEQYW RKAADMVDWH KAPSTILDSS QAPLYRWYTD
GEINTCYNAL DRQVDAGRGS QTAFHYVSPV TETEYSISYT ECLAQVKRLA GLLKAQGVNK
GDRVVIYMPM VPETAYAMLA CARIGAIHSV VFGGFAANEL ASRINDAKPV MVLSASCGVE
PSGVVAYKPL LDAALAQASH KVSKCLILQR PQYEAAMTPG RDLDWQESVA SAADADWVPV
KATDPLYVLY TSGTTGQPKG VVRDNGGHAV ALAWSMRYLY DIEPGDTFWA ASDVGWVVGH
SYIVYGPLIA GATSVLYEGK PVGTPDAGAF WRTIKKYGVK SFFTAPTAIR AIKREDPEGF
FCRNTNLDCL KQMFLAGERC DPDTLLWAQE MLGKPVIDHW WQTETGWPVA SNLMGIAQMP
IKPGSPARPV PGYQVDVVDE AGNSVGAGEY GNVVIRLPLP PGTLPTLWQN DKRYIDSYLS
MYPDCYLTGD AGYMDEDGYL YIMSRIDDVI NVAGHRLSTG RFEEVLCQHP AVAEAAVIGV
EDKLKGQVPL GLVVLKNGVD ITDEQLNKEL VALVRSEIGP VAAFKLVSAI PKLPKTRSGK
ILRATMRKIA DNQEYSVPAT IEDPATLELV RNTLTRMGYG DARV
|
|---|
| |