Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1332 |
Symbol | |
ID | 4603584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1623415 |
End bp | 1624650 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639780682 |
Product | lipoprotein releasing system transmembrane protein LolE |
Protein accession | YP_927209 |
Protein GI | 119774469 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.803281 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCTT CCTCTGCCTT TCTTATCGGA TATCGCTACT GGCGGGCCCG CAAAGCCAAT GCCTTTGCCT CCTTTATTAC CCTGTTTGCC GTGAGTGGTA TTTTCCTCGG AGTTGCCGCC CTGATTGTGG TCAGCTCAGT GATGAATGGC CTGGAAGGGC AACTCAAAAC GCGCATTCTT GGCGCCGTGC CCCAGGTGGT TGTTGAAAAA AACGATGGCT TCGCCGACTG GCGTCAAACG GCCGACCAGC TGCAAGCAAC GTTGCCGGGC ATTGTGGGCG TAAGCCCATC CACAGGGACC CAGGCCATGT TGCAATCGAG CAGCAACATC GGTGCCGTGC AGCTTTCCGG TATTCTGCCT GAGGTGGAGT CAGCCCTGGC GAGCCGAACT ACCACTGTCT ACTCTCCCGC CTTCGACAGC CTTATCAGCG GCGAATACCG GATAATCCTT GGGGTACAGC TCGCGTCAGA GCTGGATGTG GCCGTGGGGG ACACCATCCG GGTGCTCAGC GGCGAAGGCG TGGTGTTTTC ACCTTTGGGG CCCGTACCCA GCCAGCGTAA GTTTATCGTA TCGGGGCTCT TTCAGATGGG GTCTCAGGTG GATGCCCAAC TTGCTTTTAT TCATTATGAC GATGCCCGCC GTCTGATGCG AAAAGCACCG GACAAGGTGG ATGGCCTCAG ATTGTATCTG GACGATCCCT TTGAGGCCGA AGCCACAGGC AAGGCTGTGC CGCAGATATT GGCAGCTGAG GGCGATACGC TCAATGTTCA TGACTGGCGC GACGGCTACG GCCACCTGTT TGGTGCAGTC AAAATGGAAA AGAATATGAC GTCGCTGATG CTCAGCCTGA TAGTGGCGGT GGCAGCGTTT AACATAGTAT CGGCGCTGGT GATGATGGTG GTGGATAAAA CCACCGATGT GGCCGTACTG ATGACCCAGG GACTGACCCG CAGTGCCGTG ATGGGGATTT TTGTGACCCA GGGTTCCCTG AATGCCTTAC TGGGACTGGT GCTTGGGCTG ATTGCCGGTT TAGTACTGAC GCTGAACCTG AATCCGCTGC TCAGCGCTCT GGGGATTGCT GTGCTGGGCG CAGGGCAGCC TCTGCCGGTG ATAATCGCTG CCGAGCAGCT CTGGCTGATA GTGATTGGCA CTGTGGCCAT AACTTTGCTG GCGACTCTGT ACCCGGCACT CAGGGCGTCC CGGGTGGAAC CCGCTTCGGC GCTCAGATAC GAATAA
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Protein sequence | MFSSSAFLIG YRYWRARKAN AFASFITLFA VSGIFLGVAA LIVVSSVMNG LEGQLKTRIL GAVPQVVVEK NDGFADWRQT ADQLQATLPG IVGVSPSTGT QAMLQSSSNI GAVQLSGILP EVESALASRT TTVYSPAFDS LISGEYRIIL GVQLASELDV AVGDTIRVLS GEGVVFSPLG PVPSQRKFIV SGLFQMGSQV DAQLAFIHYD DARRLMRKAP DKVDGLRLYL DDPFEAEATG KAVPQILAAE GDTLNVHDWR DGYGHLFGAV KMEKNMTSLM LSLIVAVAAF NIVSALVMMV VDKTTDVAVL MTQGLTRSAV MGIFVTQGSL NALLGLVLGL IAGLVLTLNL NPLLSALGIA VLGAGQPLPV IIAAEQLWLI VIGTVAITLL ATLYPALRAS RVEPASALRY E
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