| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1235 |
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| Symbol | |
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| ID | 4603487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1519261 |
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| End bp | 1520889 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780585 |
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| Product | peptide ABC transporter, periplasmic peptide-binding protein |
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| Protein accession | YP_927112 |
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| Protein GI | 119774372 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.650831 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.763441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCGC TGACAACCCG GCTTTATCGG TTTGCACTGC TGCCCCTTCT CGGTGGTTGG
CTCGCGGCCT GTGGCCATCA GCAATTGCCA CCTGGGGTGG TTTACTGCTC CGAAGGTAAC
CCTGAATCAT TCAATCCCCA GACAGTGACA TCCGGCACCA CCATAGATGC CACATCCCAG
CAGATATACA GCCGCTTGGT GGATTACGAC GCCGAAGAAG GCAAGATAGT ACCTGCACTG
GCCGAACGTT GGAGCATCAG CGATGACGGC TTGGAGTATC GTTTCGTATT GCGCCAGGGC
GTACAGTTTC ATCATTCTGC CAAGTTCACC CCCAGTCGCC CAATGAATGC CGACGATGTA
CTGTTTTCAT TCCAGCGCAT TCTCGATGAT GAACATCCCT TTCACTGGGT TTCCCGCAGC
GGCTATCCGT TTTTCCAAAG CATCGATTTC GCCAATCAGG TTGCCTCGGT AACCAAGGCT
GGCGATAACG AGGTGGTGTT TAAACTCAAT CACACTGATG CGTCGTTTTT ATCGAATCTT
GCCACGGACT TTGCCGTTAT CCTGTCAGCC GAATACGCAG CCCAGCAACT GAGGGCCGGC
ACCCCCGAAC AGCTCGACAT CCAGGCAATA GGCACTGGAC CGTTCCGGTT GGTGGAGTAT
GTGAAGAACG AATATATTCG CTACCGTCGC CACGAAGACT ATTGGGGGAA GGCACCTGAA
ATAGACATGC TGGTGTACGA CATCACCTCC AAGAGCACTG TGCGCTTATC AAAGCTCATC
ACGGGTGACT GCAGCGTGTC CGCCCTGCCC AAAGCCGGTG AGCTTGATTT GATTGAGGCG
CATCCTGAGC TTACGTTGGA GTCCAAGCCT GGCCTCAATG TGGCCTTTTG GGCATTCAAT
ACTCAAAAAG CGCCATTCAA TGATGTGCGG GTACGCAAAG CCCTGTCACT GGCCATAGAT
AAGCGCAACA TTCTTGCGGC CGTATACCAG GATACCGCTG TCGAGGCGCA AAGCCTGCTG
CCGCCCTCCT CCTGGGCGTA TGCCAGGGAT TATGAACTCG ACATTGACTA TTCGCCTTCC
AGAGCCATGA CCCTGCTGGC CGATGCCGGC ATTCGGAACC TCAGCATTGA CATCTGGGCC
ATGCCGGTAG CCAGGGCATA CAACCCCAAT GCCCTGAAAA CAGCAGAACT TATTCAGGCC
GATTTGGCCA ACATCGGGGT AAAGGCCAAT ATCATCAGCT ATGACTGGTC GGTGTTTACC
CAGAAATTGA ATCAGAGCGA TTATGACTCT GTGCTTATCG GCTGGAATGC CGACAACAGC
GACCCTGACA ACTTTTTCAG CCCACTATTG AGCTGCGCCT CCATGGCATC GGGAAGTAAC
CGTTCACGTT GGTGTAACCC CGCATTTGAC CAGCTGCTGT CCAAAGCCCG TTCGACCACC
GACAGATTGG AGCGCACCGC CCTCTATCAA GAGGCTCAGG CCACAGTTGC CAAGGAATTG
CCCCTGTTTG CCTTCGCACA CGCCAAGCGC TCGCTGGTGC ACCGCAACAA TATTCAGCAT
ATGCCGGTAA CGCCCTTTGG CGGTATTGCC TTCGCCGACA TCCAGCCTGC AACGGAGGAG
AAGAACTGA
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| Protein sequence | MNALTTRLYR FALLPLLGGW LAACGHQQLP PGVVYCSEGN PESFNPQTVT SGTTIDATSQ
QIYSRLVDYD AEEGKIVPAL AERWSISDDG LEYRFVLRQG VQFHHSAKFT PSRPMNADDV
LFSFQRILDD EHPFHWVSRS GYPFFQSIDF ANQVASVTKA GDNEVVFKLN HTDASFLSNL
ATDFAVILSA EYAAQQLRAG TPEQLDIQAI GTGPFRLVEY VKNEYIRYRR HEDYWGKAPE
IDMLVYDITS KSTVRLSKLI TGDCSVSALP KAGELDLIEA HPELTLESKP GLNVAFWAFN
TQKAPFNDVR VRKALSLAID KRNILAAVYQ DTAVEAQSLL PPSSWAYARD YELDIDYSPS
RAMTLLADAG IRNLSIDIWA MPVARAYNPN ALKTAELIQA DLANIGVKAN IISYDWSVFT
QKLNQSDYDS VLIGWNADNS DPDNFFSPLL SCASMASGSN RSRWCNPAFD QLLSKARSTT
DRLERTALYQ EAQATVAKEL PLFAFAHAKR SLVHRNNIQH MPVTPFGGIA FADIQPATEE
KN
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